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Protein Overview: SPAC23H4.15

General Information:
Name(s) found: SPAC23H4.15 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • ribosome biogenesis protein Tsr1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 783 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    Molecular Function: ribonucleoprotein binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHHHRSTFK AKKPFKSKHA SKSSLKEKYK NEVEPHRSGP KNIVHTSTKA DRRNTAKQIQ  60
   61 LNKRTEVAMN NRIFGGKNGA PKVITIVPLC NNVDSWNVLT NLLRSIDPEA SLPKFDKDSI 120
  121 SYSTTIDRFK QNLLFLLPKR EFYSLIDACK VSDYVIFVLS AVQEVDEFGE LIVRTTQGQG 180
  181 ISSVLSMVHD LSEVDSLKTR NEVKKSLQSF MNFFFSDQER VFAADVSQDA LNVMRALCTS 240
  241 HPRGIHWRDS RSYLLSQEIS YSNGNLLVRG IVRGKGLDPN RLIHIQGFGD FAINRIYEAP 300
  301 QGIQNSRGIS MDEDTNLTGG LVELCSPTQE QDSLESLGPI IDDMDTDMDS EVGKEASRGV 360
  361 RLDDFYYFDD EEEPVAVAKR VPKGTSTYQA TWIPDEDEES DQYSDVEDTE VIIEDQDNQE 420
  421 ISNHVAEEKI DSDEEETIDD AKSEMFVDLS EEEEVRQYEE YRKKQKELQE ELEFPDEVEL 480
  481 QPNELARERF KKYRGLRSLY TSQWDADEYD PNEPREWRQL FKFENYRNLK NKFLKQPFIG 540
  541 EAKPGKAVYV ELRNVPIEIF EYYNKPWNLL VLYSLLQYEN KLTVSQFTAM QHSEYEEPIE 600
  601 SKEELLLQIG PRRFMVRPLY SDPTASGASN NLQKYHRYLP PKQAVIASVI SPIVFGNVPI 660
  661 IMFKKSSDNS LRLAATGSYV NCDTNSVIAK RAVLTGHPFK VHKKLVTIRY MFFNPEDVIW 720
  721 FKPIQLFTKQ GRTGYIKEPL GTHGYFKATF NGKITVQDTV AMSLYKRMYP LPCELFKVTD 780
  781 IDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] deduced N/A No confident structure predictions are available.
    2 View Details [77..285] PSI-BLAST 4.30103 Initiation factor eIF2 gamma subunit, domain II; Initiation factor eIF2 gamma subunit; Initiation factor eIF2 gamma subunit, N-terminal (G) domain
    3 View Details [286..340] deduced N/A No confident structure predictions are available.
    4 View Details [341..516] MSA 1.06699 View MSA. No confident structure predictions are available.
    5 View Details [517..576] deduced N/A No confident structure predictions are available.
    6 View Details [577..712] MSA 1.04197 View MSA. No confident structure predictions are available.
    7 View Details [713..783] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle