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Protein Overview: rid1

General Information:
Name(s) found: rid1 / SPBC1709.12 [Sanger Pombe]
Description(s) found:
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  • pir||T39640 hypothetical protein SPBC1709.12 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582546|sp|O74737.1|RID1_SCHPO RecName: Full=GTPase-binding protein rid1 [NCBI NR]
  • gi|3738150|emb|CAA21251.1| GTPase binding protein Rid1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112237|ref|NP_595445.1| GTPase binding protein Rid1 [Schizosaccharomyces pombe] [NCBI NR]
  • GTPase binding protein Rid1 [Sanger Pombe]
  • GTPase-binding protein rid1 OS=Schizosaccharomyces pombe GN=rid1 PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: O74737; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPBC1709.12 protein [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|3738150|emb|CAA21251.1| SPBC1709.12 [Schizosaccharomyces pombe]gi|7491422|pir||T39640 hypothetical protein SPBC1709.12 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O74737) Hypothetical protein [pompep4896_normal_reversed]
  • |rid1||GTPase binding protein Rid1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC1709.12 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC1709.12 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 367 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TAS]
    medial cortex [TAS]
    cell division site [IDALink to PubMed article]
    cell tip [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: actin cytoskeleton organization [ISSLink to PubMed article]
    Molecular Function: actin binding [IEA]
    GTPase binding [TAS]
    Rho GTPase binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLRSVKRL LGARSLSSDG LSESVNSSDR EDSLSFQTPS TPSEDEMPQC FEDLIKPQVL  60
   61 SSEASKSLLS LNEGIKMEIV SSLQQKDQKK RNKLIAWMRK KPCYEQPDDF ISYIVNTKID 120
  121 SIDESIIHKL ALLLRNEQVI WVEKFIHNGG FGVVFCTIDK ISRLEWREEL HDSILEQLLL 180
  181 CVKAMCTVQR GLECLSQSTY NVERLISLLL SKKQPCDFVV REVLVQIVHS FYKAHLDKEE 240
  241 GAMQVFSLFS IKDDKDEEVE FLKNVRVDRP FRRWIIELED VSRNVFWVWN HDSNVIDLEK 300
  301 QYNQVYEAPL GFIGGIETEA TSYVAAHIHL INELLEGLPL EKRQRKRLEL QLSGLERIMG 360
  361 LRFRKSR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..367] PSI-BLAST 54.39794 Crystal structure of mDIA1 GBD-FH3 in complex with RhoC-GMPPNP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.91891696274037 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.87445452940188 bayes_pls_golite062009
  • actin binding
    		•  2.85468099286342 bayes_pls_golite062009
  • protein binding
    		•  1.94427330399472 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.169755106399802 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.53

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle