YRC Public Data Repository - Protein Structure Prediction

Protein:	rid1
Organism:	Schizosaccharomyces pombe
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rid1.

Description	E-value	Query Range	Subject Range
gi\|85077228 - gi\|85077228\|ref\|XP_955991.1\| cytokinesis protein sepA [Neurospora crassa OR74A] gi\|32414781, gi\|... - gi\|32414781\|ref\|XP_327870.1\| hypothetical protein [Neurospora crassa], gi\|28917030\|gb\|EAA26755.1\| cy...	308.0	[0..24]	[361..255]
gi\|28950342 - gi\|28950342\|emb\|CAD70966.1\| probable Cytokinesis protein sepA [Neurospora crassa]	308.0	[0..24]	[361..255]
SEPA_EMENI - Cytokinesis protein sepA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194... SEPA_EMENI - Cytokinesis protein sepA OS=Emericella nidulans GN=sepA PE=3 SV=2	306.0	[0..11]	[361..249]
gi\|67540706, gi\|... - gi\|67540706\|ref\|XP_664127.1\| SEPA_EMENI Cytokinesis protein sepA (FH1/2 protein) (Forced expression ...	306.0	[0..11]	[361..249]
gi\|39944100, gi\|... - gi\|39944100\|ref\|XP_361587.1\| hypothetical protein MG04061.4 [Magnaporthe grisea 70-15], gb\|EAA50302....	306.0	[0..2]	[361..214]
gi\|42552609, gi\|... - gi\|46121675\|ref\|XP_385392.1\| hypothetical protein FG05216.1 [Gibberella zeae PH-1], gi\|42552609\|gb\|E...	304.0	[0..16]	[364..235]
gi\|116199253, gi... - gi\|88179061\|gb\|EAQ86529.1\| hypothetical protein CHGG_07782 [Chaetomium globosum CBS 148.51], gi\|1161...	291.0	[0..20]	[361..197]
gi\|114191744, gi... - gi\|115398544\|ref\|XP_001214861.1\| cytokinesis protein sepA [Aspergillus terreus NIH2624], gi\|11419174...	291.0	[0..37]	[361..280]
gi\|70984130, gi\|... - gi\|70984130\|ref\|XP_747584.1\| cytokinesis protein SepA/Bni1 [Aspergillus fumigatus Af293], gi\|6684521...	284.0	[0..27]	[361..273]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLRSVKRL LGARSLSSDG LSESVNSSDR EDSLSFQTPS TPSEDEMPQC FEDLIKPQVL  60
   61 SSEASKSLLS LNEGIKMEIV SSLQQKDQKK RNKLIAWMRK KPCYEQPDDF ISYIVNTKID 120
  121 SIDESIIHKL ALLLRNEQVI WVEKFIHNGG FGVVFCTIDK ISRLEWREEL HDSILEQLLL 180
  181 CVKAMCTVQR GLECLSQSTY NVERLISLLL SKKQPCDFVV REVLVQIVHS FYKAHLDKEE 240
  241 GAMQVFSLFS IKDDKDEEVE FLKNVRVDRP FRRWIIELED VSRNVFWVWN HDSNVIDLEK 300
  301 QYNQVYEAPL GFIGGIETEA TSYVAAHIHL INELLEGLPL EKRQRKRLEL QLSGLERIMG 360
  361 LRFRKSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	1z2cB
Description:	Crystal structure of mDIA1 GBD-FH3 in complex with RhoC-GMPPNP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.91891696274037	bayes_pls_golite062009
cytoskeletal protein binding	2.87445452940188	bayes_pls_golite062009
actin binding	2.85468099286342	bayes_pls_golite062009
protein binding	1.94427330399472	bayes_pls_golite062009
nucleic acid binding	0.169755106399802	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: