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Protein Overview: SPBC6B1.05c

General Information:
Name(s) found: SPBC6B1.05c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • ubiquitin-like conjugating enzyme [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 649 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: autophagy [IMPLink to PubMed article]
    protein targeting to vacuole [ISSLink to PubMed article]
    macroautophagy [IC]
    cellular response to nitrogen starvation [IMPLink to PubMed article]
    Molecular Function: small conjugating protein ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVGKALQFQ SFHSSIDATF WHQLSNYKVE KQKLDASPLT IHGKFNTYSR GNISIVFGEA  60
   61 PSNSNIKDCL AEGTLLNANT PQEFTNADVK KIREEIGEVL LNSIKNGVVS ERPNELLRFL 120
  121 IFSYADIKAY KYHYWCLFPS FKETPHWIVK DLSPAESLIP SGPILSQIRE FLSTADYYQR 180
  181 PFFLLIKSTL DEWTIAPLKE LSHCVDKSLQ FYLVAEDSVQ LAEYPSWPVR NILAFAFIKF 240
  241 KLKVINLFLY RDGINSDTLS KSILIKVEAD KDMILEAPLS IVGWERNGKG VLGPRVVNLS 300
  301 TVLDPFVLSE SASTLNLSLM RWRLVPQLDL DRIQNSKCLL LGAGTLGCGV ARNLLSWGVR 360
  361 HVTFVDYSTV SYSNPVRQSL FTFEDCKRKL PKAECAAQRL KEIYPNMFST GYNISIPMLG 420
  421 HPIYEAGIEK TMHDYETLEN LISTHDAIFL LTDTRESRWL PTVISTAMDK LLINSALGFD 480
  481 SWLVMRHGSV LQKENRLGCY FCNDIFAPSN SLVDRTLDQT CTVTRSGCAN IATAIAVELF 540
  541 VSLLQHPNGH AAPVLNEDQT VLGELPHQIR GFLHNFSLMK ISGMAYPQCS ACSECIINEW 600
  601 NREKWMFVLR AINEPDYVEE LCGLREVQAL GEIAGTMEEW ISDKESVIL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] MSA 1.037976 View MSA. No confident structure predictions are available.
    2 View Details [144..303] deduced N/A No confident structure predictions are available.
    3 View Details [304..649] PSI-BLAST 65.154902 Molybdenum cofactor biosynthesis protein MoeB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • small protein activating enzyme activity
    		•  3.58068602287881 bayes_pls_golite062009
  • NEDD8 activating enzyme activity
    		•  2.11391077579348 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.84216910649062 bayes_pls_golite062009
  • binding
    		•  1.66028321721112 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.54883560427918 bayes_pls_golite062009
  • protein binding
    		•  1.40907622346701 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.31244773198273 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.27535252106053 bayes_pls_golite062009
  • catalytic activity
    		•  1.22201444897049 bayes_pls_golite062009
  • transferase activity
    		•  0.680338489823338 bayes_pls_golite062009
  • URM1 activating enzyme activity
    		•  0.207228630005671 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle