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Protein Overview: gcd10

General Information:
Name(s) found: gcd10 / SPBC800.08 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • translation initiation factor eIF-3 gamma subunit Gcd10 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 462 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    tRNA (m1A) methyltransferase complex [ISSLink to PubMed article]
    Biological Process: tRNA methylation [ISSLink to PubMed article]
    translational initiation [ISSLink to PubMed article]
    regulation of translational initiation [IEA]
    Molecular Function: tRNA (adenine-N1-)-methyltransferase activity [ISS]
    tRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRHASTISE NSSVFIKLPS DNVRFVTLKP NNTIHLGKFG SFLADDLFGK HFDETFEIYQ  60
   61 PKKIRVLKTR EVQYIEEEKK TNQELNDCRG NQLMTQEEID ELRANIKAGG LRAEEAIKQL 120
  121 TNSSKTFEQK TLFAQEKYVT RKGEKYLQRF QVLRPCVEVV ANYMIEHDPY KILDLTAECI 180
  181 SLMLTLGNVK PGGRYLVVDE TGCMFLGSLI DRVAGDCKIT LVHPNEQPNS SCLEYWGQDF 240
  241 KEDSLVQKGI LKTLNWYQVT NPTETLSEYS VEDIPESELN EMKLRHRKRY ETKKATFNRL 300
  301 KNTIDDFESG NYDALFILSI HTPMSVLQHL LPKLGISRPF MVYSTYQQVL VETYHQLSKW 360
  361 DNLFVEKTAQ STENDEKVDQ GDVAIDTQKE KVIMLDIHEI RTRPYQVLPE RTHPFMTVRG 420
  421 DMGFVLSGIK VLTSDSNLAA GRFPKRKGQK ETSSVKKAKL EN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..462] FFAS03 1.48 Probable methyltransferase Rv2118c

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tRNA (adenine-N1-)-methyltransferase activity
    		•  8.35052619058198 bayes_pls_golite062009
  • tRNA (adenine)-methyltransferase activity
    		•  8.35052619058198 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  7.44275105246879 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  6.5439125367639 bayes_pls_golite062009
  • methyltransferase activity
    		•  3.68431317301075 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  3.64494850793256 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  3.60853685152199 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  3.51986359093355 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  2.666651371662 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  2.63941856307703 bayes_pls_golite062009
  • arginine N-methyltransferase activity
    		•  1.99340565364513 bayes_pls_golite062009
  • protein-arginine N-methyltransferase activity
    		•  1.99340565364513 bayes_pls_golite062009
  • transferase activity
    		•  1.97261773840408 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  1.85380504590369 bayes_pls_golite062009
  • DNA-methyltransferase activity
    		•  1.77527486495102 bayes_pls_golite062009
  • histone-arginine N-methyltransferase activity
    		•  1.64765900536818 bayes_pls_golite062009
  • tRNA (cytosine)-methyltransferase activity
    		•  1.54257365884902 bayes_pls_golite062009
  • tRNA (cytosine-5-)-methyltransferase activity
    		•  1.54257365884902 bayes_pls_golite062009
  • protein-arginine omega-N monomethyltransferase activity
    		•  1.27753381141602 bayes_pls_golite062009
  • catalytic activity
    		•  1.16970557486814 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.953292160159369 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.750060357052574 bayes_pls_golite062009
  • histone methyltransferase activity (H4-R3 specific)
    		•  0.735680462496249 bayes_pls_golite062009
  • DNA binding
    		•  0.728534001468705 bayes_pls_golite062009
  • protein-arginine omega-N asymmetric methyltransferase activity
    		•  0.51222176401398 bayes_pls_golite062009
  • binding
    		•  0.486361285495359 bayes_pls_golite062009
  • RNA binding
    		•  0.413112349791396 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  0.286806504860858 bayes_pls_golite062009
  • rRNA (adenine) methyltransferase activity
    		•  0.113328595762489 bayes_pls_golite062009
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
    		•  0.0390774859535424 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle