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Protein Overview: vps17

General Information:
Name(s) found: vps17 / SPAPJ696.01c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • retromer complex subunit Vps17 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 549 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear membrane [IDALink to PubMed article]
    prospore membrane [IDALink to PubMed article]
    retromer complex, outer shell [IEA]
    retromer complex [IMPLink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: ascospore formation [IGILink to PubMed article][IMPLink to PubMed article]
    intracellular protein transport [IMPLink to PubMed article]
    retrograde transport, endosome to Golgi [IMPLink to PubMed article][ISSLink to PubMed article]
    Molecular Function: phosphoinositide binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQHSTDDL MNSHVFSGGF STLDDKGFQD VPIHTDMPGS ISVEPSSEDA NVGSVNGNIN  60
   61 ETPVFEADRL IAEATMNPSA ASSTTGENSI SQTGSGPFLR IRIVDIEAEN SKDPVIKMNV 120
  121 QTTLPAYRSK LYKNVRRTHA EFKKFAKYLI STHPECLIPA VPEAKTSVSS GIKEDLIYLK 180
  181 SGLQSWLNYV STNPNLLYDP ELQLFVESDY GYSPLINTGN PTSGLKRKAL KQFPLPPDPC 240
  241 QALANLRPIV KSFYKNAKDA EIKLEKLVNR KQSLALTHAD LGQSLIDYSV EEQHNGLANA 300
  301 LNRVGKMLQA ISDVRIMQSS KQLVTLADSL CYASDNAFVV KEILSNRHIL MRDLISSKNQ 360
  361 TNSYLSAANR LQDSPKISKA RTDDALQALE VARVHEKLLS DKVDFVTLNL VKESKTYTKK 420
  421 TSVSLQKAIR EYVEKEAYYE RRLLSIMESI RPHIRNIDPF GGLSRLGREE YPRRLSNPPP 480
  481 SQKTNQDAWT NRKRPGYSSS FDGSSQSTFN PSNNDGAHNT SENADELVEP PIGNERLDPK 540
  541 SVANLLNAI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] deduced N/A No confident structure predictions are available.
    2 View Details [88..197] PSI-BLAST 12.69897 No description for 2dybA was found.
    3 View Details [198..549] PSI-BLAST 9.30103 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle