YRC Public Data Repository - Protein Structure Prediction

Protein:	vps17
Organism:	Schizosaccharomyces pombe
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps17.

Description	E-value	Query Range	Subject Range
gi\|49089258, gi\|... - gi\|67523537\|ref\|XP_659828.1\| hypothetical protein AN2224.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	241.0	[0..8]	[547..27]
gi\|46136169, gi\|... - gi\|46136169\|ref\|XP_389776.1\| hypothetical protein FG09600.1 [Gibberella zeae PH-1], gi\|42553308\|gb\|E...	228.0	[0..2]	[548..46]
gi\|238494458, gi... - gi\|238494458\|ref\|XP_002378465.1\| vacuolar protein sorting-associated protein vps17 [Aspergillus flav... gi\|169777327 - gi\|169777327\|ref\|XP_001823129.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771866 - gi\|83771866\|dbj\|BAE61996.1\| unnamed protein product [Aspergillus oryzae]	228.0	[0..2]	[547..31]
gi\|90300969, gi\|... - gi\|90300969\|gb\|EAS30600.1\| hypothetical protein CIMG_06079 [Coccidioides immitis RS], gi\|119182050\|r...	226.0	[0..16]	[547..46]
gi\|115437966, gi... - gi\|115437966\|ref\|XP_001217945.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	221.0	[0..14]	[547..30]
gi\|66851555, gi\|... - gi\|70998394\|ref\|XP_753919.1\| vacuolar protein sorting-associated protein vps17 [Aspergillus fumigatu...	220.0	[0..2]	[547..21]
gi\|38109995, gi\|... - gi\|39951583\|ref\|XP_363508.1\| hypothetical protein MGG_01434 [Magnaporthe grisea 70-15], gb\|EAA55783....	217.0	[0..24]	[547..60]
gi\|114601330, gi... - gi\|114601336\|ref\|XP_001154100.1\| PREDICTED: sorting nexin 2 isoform 8 [Pan troglodytes], gi\|11460133...	208.0	[0..6]	[458..49]
gi\|33304626 - gi\|33304626\|gb\|AAQ02693.1\| transformation-related 9 [Homo sapiens]	207.0	[0..6]	[458..49]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQHSTDDL MNSHVFSGGF STLDDKGFQD VPIHTDMPGS ISVEPSSEDA NVGSVNGNIN  60
   61 ETPVFEADRL IAEATMNPSA ASSTTGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSISQTGSGP FLRIRIVDIE AENSKDPVIK MNVQTTLPAY RSKLYKNVRR THAEFKKFAK  60
   61 YLISTHPECL IPAVPEAKTS VSSGIKEDLI YLKSGLQSWL NYVSTNPNLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2dybA
Description:	No description for 2dybA was found.

Predicted Domain #3

Region A:
Residues: [198-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDPELQLFVE SDYGYSPLIN TGNPTSGLKR KALKQFPLPP DPCQALANLR PIVKSFYKNA  60
   61 KDAEIKLEKL VNRKQSLALT HADLGQSLID YSVEEQHNGL ANALNRVGKM LQAISDVRIM 120
  121 QSSKQLVTLA DSLCYASDNA FVVKEILSNR HILMRDLISS KNQTNSYLSA ANRLQDSPKI 180
  181 SKARTDDALQ ALEVARVHEK LLSDKVDFVT LNLVKESKTY TKKTSVSLQK AIREYVEKEA 240
  241 YYERRLLSIM ESIRPHIRNI DPFGGLSRLG REEYPRRLSN PPPSQKTNQD AWTNRKRPGY 300
  301 SSSFDGSSQS TFNPSNNDGA HNTSENADEL VEPPIGNERL DPKSVANLLN AI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits