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Protein Overview: srb11

General Information:
Name(s) found: srb11 / SPBC12D12.06 [Sanger Pombe]
Description(s) found:
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  • gi|7492578|pir||T39386 probable G1-S-specific cyclin C - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|46396679|sp|O94503.1|SRB11_SCHPO RecName: Full=RNA polymerase II holoenzyme cyclin-like subunit; AltName: Full=Suppressor of RNA polymerase B srb11 [NCBI NR]
  • gi|4107481|emb|CAA22680.1| cyclin CycC, Srb mediator subunit Srb11 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112745|ref|NP_595953.1| cyclin Srb11 [Schizosaccharomyces pombe] [NCBI NR]
  • cyclin CycC [Sanger Pombe]
  • (O94503) RNA polymerase II holoenzyme cyclin-like subunit (Suppressor of RNA polymerase B srb11) [Swiss-Prot]
  • RNA polymerase II holoenzyme cyclin-like subunit OS=Schizosaccharomyces pombe GN=srb11 PE=1 SV=1 [Swiss-Prot]
  • CYCLIN C HOMOLOG; PUTATIVE COMPONENT OF RNA POLYMERASE HOLOENZYME COMPLEX AND KORNBERG'S MEDIATOR (SRB) SUBCOMPLEX: O94503; [pompepVF.fasta]
  • CYCLIN C HOMOLOG, PUTATIVE COMPONENT OF RNA POLYMERASE HOLOENZYME COMPLEX AND KORNBERG'S MEDIATOR (SRB) SUBCOMPLEX: O94503; [pompepV13]
  • Putative G1-S-specific cyclin C [pompep4896]
  • |||cyclin C homolog [pompepnew.fasta]
  • RNA polymerase II holoenzyme cyclin-like subunit (Suppressor of RNA polymerase B srb11) [4896.FASTAC]
  • |srb11||cyclin|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative G1-S-specific cyclin C [Schizosaccharomyces pombe]gi|4107481|emb|CAA22680.1| SPBC12D12.06 [Schizosaccharomyces pombe]gi|46396679|sp|O94503|SRBB_SCHPO RNA polymerase II holoenzyme cyclin-like subunit (Suppressor of RNA polymerase B srb11)gi|749 [nrdb_11152004_Chlamydomonas]
  • (O94503) Putative G1-S-specific cyclin C [pompep4896_normal_reversed]
  • |srb11||cyclin CycC, Srb mediator subunit Srb11|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC12D12.06 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC12D12.06 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • RNA polymerase II holoenzyme cyclin-like subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srb11 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 228 amino acids

    Gene Ontology:
    Cellular Component: mediator complex [IDALink to PubMed article]
    Biological Process: gene-specific transcription from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANYWASSQ LTQLFLSTDL ESLEPTCLSK DTIYQWKVVQ TFGDRLRLRQ RVLATAIVLL  60
   61 RRYMLKKNEE KGFSLEALVA TCIYLSCKVE ECPVHIRTIC NEANDLWSLK VKLSRSNISE 120
  121 IEFEIISVLD AFLIVHHPYT SLEQAFHDGI INQKQLEFAW SIVNDSYASS LCLMAHPHQL 180
  181 AYAALLISCC NDENTIPKLL DLIKSTDAFK VILCVQRIIS IYYFEDIE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..228] PSI-BLAST 29.221849 Structure of the Mediator subunit cyclin C


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle