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Protein Overview: SPBC215.06c

General Information:
Name(s) found: SPBC215.06c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • human LYHRT homolog [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 178 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTKLVCQDI IKKPKLDQHR SRCHGAYFTC IDCNTTFERT DYRNHTSCMT EAQRYQKGLY  60
   61 RPTKKELKKA KMNGNAVNSK ELSPNTDNQN TPAGPTKHSL DENEKDKENK KSKKETVSSP 120
  121 AEQLLALTQN QEISLYKLLK KYNKQASKED SLDSKEVLKH LAITADAKGN YLVKPITK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] PSI-BLAST 21.69897 Solution structure of the N-terminal zinc finger domain of mouse cell growth regulating nucleolar protein LYAR
    2 View Details [86..178] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.72893576328611 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.69485293197742 bayes_pls_golite062009
  • DNA binding
    		•  1.56529962350735 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.34618935906821 bayes_pls_golite062009
  • transcription factor activity
    		•  0.482168429405299 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle