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Protein Overview: SPBP16F5.06

General Information:
Name(s) found: SPBP16F5.06 [Sanger Pombe]
Description(s) found:
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  • gi|74698191|sp|Q9HFE6.1|YNW6_SCHPO RecName: Full=Uncharacterized RNA-binding protein P16F5.06 [NCBI NR]
  • gi|19112572|ref|NP_595780.1| ribosome biogenesis protein Nop6 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|10185169|emb|CAC08545.1| ribosome biogenesis protein Nop6 [Schizosaccharomyces pombe] [NCBI NR]
  • ribosome biogenesis protein Nop6 [Sanger Pombe]
  • Uncharacterized RNA-binding protein P16F5.06 OS=Schizosaccharomyces pombe GN=SPBP16F5.06 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE NUCLEOLAR REQUIRED FOR 60S RIBOSOME BIOGENESIS; SIMILAR TO S. CEREVISIAE YOL144W: Q9HFE6; [pompepVF.fasta]
  • PUTATIVE NUCLEOLAR PROTEIN REQUIRED FOR 60S RIBOSOME BIOGENESIS; BY SIMILARITY TO YEAST YOL144W: Q9HFE6; [pompepV13]
  • Putative nucleolar protein required for 60S ribosome biogenesis [pompep4896]
  • |||putative nucleolar protein [pompepnew.fasta]
  • SPBP16F5.06 protein [4896.FASTAC]
  • |||localization nucleolus (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative nucleolar protein required for 60S ribosome biogenesis [Schizosaccharomyces pombe]gi|10185169|emb|CAC08545.1| SPBP16F5.06 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • |||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9HFE6) Putative nucleolar protein required for 60S ribosome biogenesis [pompep4896_normal_reversed]
  • |||ribosome biogenesis protein Nop6|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBP16F5.06 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBP16F5.06 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||ribosome biogenesis protein Nop6 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Uncharacterized RNA-binding protein P16F5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP16F5.06 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 478 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEKRIYVG GLSSSIESSD LESRFSRFGS VSNLEIINKS TPVGTIQRFA YLNFRTDEDK  60
   61 WQKCKSYLSN ATFKGSKLRI EEARPYYLVK LQQEKKIADL QSTNNDEKNE DHSSKVDLED 120
  121 PVFHGEIIVP GKHSKNMQVV TDSDVRKDPP RKGWKKGPYG RAIVVLRMYN KNTKKTRFFY 180
  181 PLGKNCLQKL WGRVETNMDN TTAFYDSDHD EYVSYGGKRA SRDKIRMQAK LGIKASTQKD 240
  241 DNDFELLNNT TGEIEVTKEL NEEQLDALRK KDKDTAASVL AELFGSENTE EIDTVSKTSG 300
  301 VLELDNDSTN NFQKEGLDEQ DNLQKEESVH IDVPAEFEAF DERTAVVNVD NLKEMFSSNA 360
  361 QDTSKFSLFG NENGVGEESE MESEIDDRNY ETMEEEADGE TPLAIVKASS GTKGWPKMFT 420
  421 LPNPSSLFQP GNEDYTSREA LESWWSENRL FLTRDYKRKR KDAVKRQRRA HEKRIRLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..245] PSI-BLAST 31.30103 Poly(A)-binding protein
    2 View Details [246..478] MSA 4.304976 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.72964573417386 bayes_pls_golite062009
  • binding
    		•  3.0101982407193 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.34356093608328 bayes_pls_golite062009
    		• 1.46562488829931 bayes_pls_golite062009
  • structural molecule activity
    		•  1.10982714865204 bayes_pls_golite062009
  • protein binding
    		•  0.89093640300829 bayes_pls_golite062009
  • mRNA binding
    		•  0.554135435832456 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle