YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP16F5.06
Organism:	Schizosaccharomyces pombe
Length:	478 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP16F5.06.

Description	E-value	Query Range	Subject Range
gi\|73974138 - gi\|73974138\|ref\|XP_856875.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	334.0	[0..3]	[442..9]
PABP1_BOVIN - Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 gi\|109087089 - gi\|109087089\|ref\|XP_001098239.1\| PREDICTED: poly(A) binding protein, cytoplasmic 1 isoform 2 [Macaca... gi\|123993665, gi... - gi\|168278070\|dbj\|BAG11013.1\| polyadenylate-binding protein 1 [synthetic construct], gi\|123999981\|gb\|... gi\|194036975 - gi\|194036975\|ref\|XP_001927782.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-bind... PABPC1 - poly(A) binding protein, cytoplasmic 1 gi\|73974130, gi\|... - gi\|73974178\|ref\|XP_857695.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	331.0	[0..3]	[442..9]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEKRIYVG GLSSSIESSD LESRFSRFGS VSNLEIINKS TPVGTIQRFA YLNFRTDEDK  60
   61 WQKCKSYLSN ATFKGSKLRI EEARPYYLVK LQQEKKIADL QSTNNDEKNE DHSSKVDLED 120
  121 PVFHGEIIVP GKHSKNMQVV TDSDVRKDPP RKGWKKGPYG RAIVVLRMYN KNTKKTRFFY 180
  181 PLGKNCLQKL WGRVETNMDN TTAFYDSDHD EYVSYGGKRA SRDKIRMQAK LGIKASTQKD 240
  241 DNDFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1cvjA
Description:	Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	3.72964573417386	bayes_pls_golite062009
binding	3.0101982407193	bayes_pls_golite062009
nucleic acid binding	2.34356093608328	bayes_pls_golite062009
	1.46562488829931	bayes_pls_golite062009
structural molecule activity	1.10982714865204	bayes_pls_golite062009
protein binding	0.89093640300829	bayes_pls_golite062009
mRNA binding	0.554135435832456	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [246-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLNNTTGEIE VTKELNEEQL DALRKKDKDT AASVLAELFG SENTEEIDTV SKTSGVLELD  60
   61 NDSTNNFQKE GLDEQDNLQK EESVHIDVPA EFEAFDERTA VVNVDNLKEM FSSNAQDTSK 120
  121 FSLFGNENGV GEESEMESEI DDRNYETMEE EADGETPLAI VKASSGTKGW PKMFTLPNPS 180
  181 SLFQPGNEDY TSREALESWW SENRLFLTRD YKRKRKDAVK RQRRAHEKRI RLV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: