YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: nup40

General Information:
Name(s) found: nup40 / SPAC19E9.01c [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • gi|78100748|sp|O13838.1|NUP40_SCHPO RecName: Full=Nucleoporin nup40; AltName: Full=Nuclear pore protein nup40 [NCBI NR]
  • pir||T37969 hypothetical protein SPAC19E9.01c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|2388916|emb|CAB11652.1| nucleoporin Nup40 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114216|ref|NP_593304.1| nucleoporin Nup40 [Schizosaccharomyces pombe] [NCBI NR]
  • nucleoporin Nup40 [Sanger Pombe]
  • Nucleoporin nup40 OS=Schizosaccharomyces pombe GN=nup40 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE KARYOPHERIN DOCKING COMPLEX ;PUTATIVE NUCLEAR PORE COMPLEX; SIMILAR TO S. CEREVISIAE NUP53: O13838; [pompepVF.fasta]
  • PUTATIVE COMPONENT OF THE KARYOPHERIN DOCKING COMPLEX OF THE NUCLEAR PORE COMPLEX; BY SIMILARITY TO YEAST NUP53: O13838; [pompepV13]
  • Putative component of the karyopherin docking complex of the nuclear pore complex [pompep4896]
  • |||putative karyopherin docking complex [pompepnew.fasta]
  • SPAC19E9.01c protein [4896.FASTAC]
  • |nup40||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative component of the karyopherin docking complex of the nuclear pore complex; by similarity to yeast nup53 [Schizosaccharomyces pombe]gi|2388916|emb|CAB11652.1| SPAC19E9.01c [Schizosaccharomyces pombe]gi|7490895|pir||T37969 hypothetical protein SPA [nrdb_11152004_Chlamydomonas]
  • (O13838) Putative component of the karyopherin docking complex of the nuclear pore complex [pompep4896_normal_reversed]
  • |nup40||nucleoporin Nup40|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Nucleoporin nup40 (Nuclear pore protein nup40) [nr-271106-contam.fasta]
  • hypothetical protein SPAC19E9.01c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC19E9.01c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Nucleoporin nup40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup40 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 371 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nuclear membrane [IDALink to PubMed article]
    nuclear pore [TASLink to PubMed article]
    Biological Process: mitotic cell cycle spindle assembly checkpoint [IMPLink to PubMed article]
    nucleocytoplasmic transport [TASLink to PubMed article]
    rRNA export from nucleus [ISS]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGGSGSIT NRSTLKPLSV DDLRSPSPQK EYRGFRTSVS NIPQEKKFVP SHLSHFGSSQ  60
   61 QRRFAPEVSS PLAEPYESSS SFRLSLSSPP SSKFGGPSFG TPKPFLHTNR LGTGSLIEDA 120
  121 PPTQSIYDFS SSRQINALNV GQSSSPFSPV SEKVYDPSFT MSGAPQDSNT SVIVFGFPPE 180
  181 LTNQVIAEFS RFGTIISENS LTASSAGFTP SKGPISGNWL QLTYAEPSSA AKAVLSNGML 240
  241 INDSFMVGCI YSPAEAKEHV PKTLRNSNKD LEMTDASSSE TSMSIPVHAD AHFQSQSGLG 300
  301 KKVIVQHKND IFKSSQKHQP RNWLFHYLFG FGSTEPIDEE EKSKTASDNT SLQTSLFGKI 360
  361 VQVVLHTLFG F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] MSA 1.027972 View MSA. No confident structure predictions are available.
    2 View Details [148..272] PSI-BLAST 32.09691 Crystal structure of the MPPN domain of mouse Nup35
    3 View Details [273..371] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle