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Protein Overview: dpb2

General Information:
Name(s) found: dpb2 / SPBP8B7.14c [Sanger Pombe]
Description(s) found:
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  • pir||T40808 probable DNA polymerase epsilon, subunit b - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582831|sp|O94263.1|DPB2_SCHPO RecName: Full=DNA polymerase epsilon subunit B; Short=DNA polymerase II subunit B [NCBI NR]
  • gi|3810838|emb|CAA21799.1| DNA polymerase epsilon catalytic subunit B, Dpb2 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113313|ref|NP_596521.1| DNA polymerase epsilon catalytic subunit b Dpb2 (PMID 12925774) [Schizosaccharomyces pombe] [NCBI NR]
  • DNA polymerase epsilon catalytic subunit b Dpb2 [Sanger Pombe]
  • DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe GN=dpb2 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE DNA POLYMERASE EPSILON, SUBUNIT B: O94263; [pompepVF.fasta]
  • Putative DNA polymerase epsilon, subunit b [pompep4896]
  • |dpb2||putative DNA polymerase epsilon, subunit b [pompepnew.fasta]
  • Dpb2 protein (Spbp8b7.14c protein) [4896.FASTAC]
  • |dpb2||DNA polymerase epsilon (subunit b) (PMID 12925774)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative DNA polymerase epsilon, subunit b [Schizosaccharomyces pombe]gi|3810838|emb|CAA21799.1| SPBP8B7.14c [Schizosaccharomyces pombe]gi|7492529|pir||T40808 probable DNA polymerase epsilon, subunit b - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |dpb2||DNA polymerase epsilon |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O94263) Putative DNA polymerase epsilon, subunit b [pompep4896_normal_reversed]
  • |dpb2||DNA polymerase epsilon catalytic subunit B, Dpb2|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • DNA polymerase epsilon subunit B (DNA polymerase II subunit B) [nr-271106-contam.fasta]
  • hypothetical protein SPBP8B7.14c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBP8B7.14c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 594 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    DNA replication preinitiation complex [IC]
    cytosol [IDALink to PubMed article]
    epsilon DNA polymerase complex [ISSLink to PubMed article]
    Biological Process: DNA replication initiation [IMPLink to PubMed article]
    Molecular Function: DNA replication origin binding [IDALink to PubMed article]
    DNA-directed DNA polymerase activity [IMPLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSITDSVE KKPEQVSFEV QPNALRPVAF HVFTRKYDLN INRDSLQELA SFVSKKCGSQ  60
   61 WRSQCEPLLD EIAKTWKRVH ETQPIVTRPL LIPVLANLNV PHEVRVSSLA RVQTLETTGS 120
  121 FLNSSNSEIR ETIKNEKYFR VLDAFKMPKF KYDSSRKVFV LSKQSPTLMA SASACTDMLN 180
  181 RRFNVVYSRI LRNESFQTPS FSGSFSQTGT YQLTPIRNLL GRAGNTFLLF GLLTIAPDGT 240
  241 LWLEDLDSQV QLDVSQAEQG FGLFCPGCLV LVNGQFLSSG LFLVFELGHP PIERRDASLK 300
  301 ALNNLDILGL NMDAKQLALL RHAEQAYQSQ AFVCISEVHL DNHQTFYALE KIFQKYESSE 360
  361 AVPFCIILCG SFMSSAFHNS GSSIQYKEGF NKLAASLEKF PKICEKTKFI FVPGPNDPWT 420
  421 TNGISLMPKH SIPLHFVNRI QRVCKHTIFA SNPCRIIFFS QEVLIYRDDI SGRFQRNSLK 480
  481 FGKTPQGTSN INSIPLAEQQ VHQQRKLVKT VLDQSHLSPF PSRTRPILWD FDYALSVFPL 540
  541 PSCMGLIDSE SSAFDVHYGG CPTFNPGALL LGVHYNWQEV FPVKKEIITH KERI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] deduced N/A No confident structure predictions are available.
    2 View Details [165..293] MSA 2.153988 View MSA. No confident structure predictions are available.
    3 View Details [294..594] FFAS03 1.16 Crystal structure of TT1561 of thermus thermophilus HB8

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transferase activity, transferring phosphorus-containing groups
    		•  3.253873361615 bayes_pls_golite062009
  • transferase activity
    		•  2.86536343515876 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  2.60559887605086 bayes_pls_golite062009
  • phosphatase activity
    		•  2.32143054924462 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  2.29895042460743 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  2.25451947416972 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.69489536786659 bayes_pls_golite062009
  • binding
    		•  1.50157839850353 bayes_pls_golite062009
  • catalytic activity
    		•  1.30037658165549 bayes_pls_golite062009
  • structural molecule activity
    		•  0.371786873304259 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.33393888611713 bayes_pls_golite062009
  • kinase activity
    		•  0.308698487135154 bayes_pls_golite062009
  • protein binding
    		•  0.30363127120976 bayes_pls_golite062009
  • protein kinase activity
    		•  0.108241336192419 bayes_pls_golite062009
  • hydrolase activity
    		•  0.070797330694107 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.40

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle