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Protein Overview: SPAC1093.05

General Information:
Name(s) found: SPAC1093.05 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • ATP-dependent RNA helicase Hca4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 735 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    RNA binding [IEA]
    ATP-dependent RNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNRTGRSR EAREKKRKEE EEEIEELNSQ IEALSETVDH FAELPLTQPT KSALKNAHFI  60
   61 TLTEIQKQCI PSALKGRDIL GAAKTGSGKT LAFIVPLIEN LYRKKWTSLD GLGALVISPT 120
  121 RELAIQTFET LVKIGRLHSF SAGLIIGGNN YKEEKERLSR MNILVCTPGR LLQHIDQAVN 180
  181 FDTSGLQMLI LDEADRILDM GFRTTLDAIV SSLPVHRQTM LFSATQTKSV KDLARLSLQN 240
  241 PDFISVHEND TSSTPSNLNQ FYLTVPLTEK LDILFGFIRT HLKFKTIVFL SSCKQVRFVY 300
  301 ETFRRMRPGI SLLHLHGKQK QTTRTEVTAK FTSSRHVVLF CTDIVARGLD FPAVDWVIQL 360
  361 DAPEDVDTYI HRVGRTARYN RSGNALLLLL PSEEAFLKRL ESKKIAVERI NVKDGKKTSI 420
  421 RNQLQNLCFK DNDIKYIGQK AFISYLRSIY LQKDKDVFQL DKLPVEAFAD SLGLPGTPKI 480
  481 TFGKLKNHSQ SQKDYNSSTS LDSSEESEVD VENKQNVRTK YDRIFERKNQ DVLAAHRQRL 540
  541 VEVNSDEDDG DFLQVKRVDH DLPEETGERF NANSKRKEKM ASSKKAMLKY KKSADKVYFD 600
  601 DEGNAIPFYA MNTEDTFQKA GDPAALIASH LAEERKALEK ADITDKETVR QKQLEKKRRR 660
  661 QELERITQQD ATPDEYVPEG PIVAFVDDEL PETSKKQKKW FEDNDERDHG GIVEVENLNS 720
  721 LEDQEALALK LMGAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 51.09691 No description for 2pl3A was found.
    2 View Details [150..255] FFAS03 5.27 No description for 2pl3A was found.
    3 View Details [256..393] PSI-BLAST 31.221849 No description for 2hjvA was found.
    4 View Details [394..735] PSI-BLAST 6.0 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle