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Protein Overview: snx3

General Information:
Name(s) found: snx3 / SPBC887.06c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • sorting nexin Snx3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 143 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    endosome [ISS]
    cytosol [IDALink to PubMed article]
    Biological Process: late endosome to Golgi transport [ISS]
    intracellular protein transport [ISS]
    Molecular Function: phosphoinositide binding [ISSLink to PubMed article]
    phosphatidylinositol-3-phosphate binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLSRPEIR QQTTQQMYDV PENILEIDVI NPQTHGIGRN MFTTYEIVCR TNMPYFRLHN  60
   61 SSVRRRYSEF EKFHDMLERE SGRVSIPPLP GKIFTQRFRD DVIEERRQGL ENFLRLVAGH 120
  121 PLIQTHSRVL SSFLQSPEFK PTP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 26.09691 Crystal structure of the yeast PX-doamin protein Grd19p (sorting nexin3) complexed to phosphatidylinosytol-3-phosphate.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.88408675542289 bayes_pls_golite062009
  • protein binding
    		•  2.01416287650553 bayes_pls_golite062009
  • phosphoinositide binding
    		•  1.69611539954228 bayes_pls_golite062009
  • phospholipid binding
    		•  1.3509978234193 bayes_pls_golite062009
  • lipid binding
    		•  0.663652920263169 bayes_pls_golite062009
  • phosphatidylinositol-3-phosphate binding
    		•  0.643843925142106 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle