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Protein Overview: SPCC794.04c

General Information:
Name(s) found: SPCC794.04c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • membrane transporter [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 547 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    plasma membrane [ISSLink to PubMed article]
    Biological Process: amino acid transmembrane transport [ISS]
    Molecular Function: amino acid transmembrane transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIFLITGY KYRHLNLEAY NAKSRAIENE KRYLGNDRNL PFHREREKVE SNPNSSDEED  60
   61 LTSTNNTRSS DNTTSDTEDD SGEDSYQVEW ESGKDPLAPK NWPMWKKIYT LLVASFIAIV 120
  121 ITANSSIFSD GGGIAAQQYH VGATVGDLCS ATFLLGFAAG SVLFAPLSEV YGRLPLYSVT 180
  181 LVIFVVFQIG GGCSKNIWSL VIFRFFHGFF GCTPMSACGG TISDLFNPIQ RTGALLVFCA 240
  241 AAFVGPLVGP VMGGYITESK LGWRWDFWIN MIWAGLTWVI VCFTMPETHS ETLLDFKARY 300
  301 LRKKTNCDKW YNEHEHQRDP AYAIRTALTR GVRLLCTEPI VQAFCMYLVF INILLYICMV 360
  361 GYPLIFYQYG FNAGEVGLAI LGILVGILLG LALTPIIYVH YRRRYEMRDG NICPEDRLFP 420
  421 LFFGSFFIPI ALFWLGWTCY PSVHWAAPMV SGIFLGWGFL YVLAVCYSYL VDCYHEMAAS 480
  481 ALSVATFTRY AAGGGMTIVA RPMYNNLNYH WATSLLAFVG CGLVPIPFIF FFWGRRIRQR 540
  541 SPHAYKG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] deduced N/A No confident structure predictions are available.
    2 View Details [85..547] PSI-BLAST 32.522879 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.59744164024479 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.54194478414824 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.21266150105753 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.79369588808394 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  1.24937104052238 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • binding
    		•  1.01584233411372 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle