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Protein Overview: tcg1

General Information:
Name(s) found: tcg1 / SPBC660.11 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • single-stranded telomeric binding protein Tgc1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: chromosome, telomeric region [IEA]
    cytosol [IDALink to PubMed article]
    Biological Process: telomere maintenance [TASLink to PubMed article]
    ribosome biogenesis [ISS]
    cellular response to stress [IEPLink to PubMed article]
    Molecular Function: RNA binding [IEA]
    single-stranded telomeric DNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEETVTQN APNTVQDQVE ASVDAAVHAS AEQSNTPAQQ ADDFRVFVGR LSTSTKKSEI  60
   61 RSLFETVGTV RKVTIPFRRV RRGTRLVPSG IAFVTFNNQE DVDKAIETLN GKTLDDREIV 120
  121 VQKARPVQEQ PIKDRKKSKN KNGEEPETST SVENAESAKG SSDENEANTA TAPSSNEANG 180
  181 VDKKQNEIKG KGGSGKNKAK PLPPNSIYVS GLSVTLTNEG LKEMFDAYNP TRARIAVRSL 240
  241 PPYIIRRIKL RGEQRRGRGF GFVSFANAED QSRAIEEMNG KQVGDLTLVV KSAVFREDKQ 300
  301 NDENEKNENE PIEASESAPT NVSDSTEPKA SEVDSEEKSG VTASAITA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..348] PSI-BLAST 11.522879 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.80563734517858 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.62069582260482 bayes_pls_golite062009
  • RNA binding
    		•  1.96321378335448 bayes_pls_golite062009
  • telomeric DNA binding
    		•  1.29057636847693 bayes_pls_golite062009
  • protein binding
    		•  1.02232785292059 bayes_pls_golite062009
  • mRNA binding
    		•  0.79383576791259 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle