YRC Public Data Repository - Protein Structure Prediction

Protein:	tcg1
Organism:	Schizosaccharomyces pombe
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tcg1.

Description	E-value	Query Range	Subject Range
gi\|159130644 - gi\|159130644\|gb\|EDP55757.1\| polyadenylate-binding protein [Aspergillus fumigatus A1163] PABP_ASPFU - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1 PABP_ASPFU - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fumigata (strain ATCC MYA-4609...	193.0	[0..1]	[346..5]
PABP_CHAGB - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum (strain ATCC 6205 / CB... PABP_CHAGB - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1	192.0	[0..5]	[346..27]
gi\|76633747 - gi\|76633747\|ref\|XP_881817.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	192.0	[0..34]	[346..1]
gi\|73974140 - gi\|73974140\|ref\|XP_856918.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	192.0	[0..34]	[346..1]
gi\|35570, gi\|538581 - pir\|\|DNHUPA polyadenylate-binding protein - human, gi\|35570\|emb\|CAA68428.1\| unnamed protein product...	191.0	[0..34]	[346..1]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEETVTQN APNTVQDQVE ASVDAAVHAS AEQSNTPAQQ ADDFRVFVGR LSTSTKKSEI  60
   61 RSLFETVGTV RKVTIPFRRV RRGTRLVPSG IAFVTFNNQE DVDKAIETLN GKTLDDREIV 120
  121 VQKARPVQEQ PIKDRKKSKN KNGEEPETST SVENAESAKG SSDENEANTA TAPSSNEANG 180
  181 VDKKQNEIKG KGGSGKNKAK PLPPNSIYVS GLSVTLTNEG LKEMFDAYNP TRARIAVRSL 240
  241 PPYIIRRIKL RGEQRRGRGF GFVSFANAED QSRAIEEMNG KQVGDLTLVV KSAVFREDKQ 300
  301 NDENEKNENE PIEASESAPT NVSDSTEPKA SEVDSEEKSG VTASAITA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	2ghpA
Description:	No description for 2ghpA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.80563734517858	bayes_pls_golite062009
nucleic acid binding	2.62069582260482	bayes_pls_golite062009
RNA binding	1.96321378335448	bayes_pls_golite062009
telomeric DNA binding	1.29057636847693	bayes_pls_golite062009
protein binding	1.02232785292059	bayes_pls_golite062009
mRNA binding	0.79383576791259	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: