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Protein Overview: fim1

General Information:
Name(s) found: fim1 / SPBC1778.06c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • fimbrin [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 614 amino acids

    Gene Ontology:
    Cellular Component: actomyosin contractile ring [IDALink to PubMed article]
    [NOT]actin filament bundle [IDALink to PubMed article]
    actin cortical patch [IDALink to PubMed article]
    Biological Process: ascospore formation [IMPLink to PubMed article]
    actin crosslink formation [IPILink to PubMed article]
    negative regulation of actin filament depolymerization [IMPLink to PubMed article]
    cytokinesis, actomyosin contractile ring assembly [IMPLink to PubMed article]
    cell morphogenesis [IGILink to PubMed article]
    establishment or maintenance of cell polarity [IMPLink to PubMed article]
    cytokinesis [IGILink to PubMed article]
    actin cytoskeleton organization [IGILink to PubMed article]
    actin cortical patch localization [IMPLink to PubMed article]
    actin filament bundle assembly [IMPLink to PubMed article]
    Molecular Function: actin filament binding [TASLink to PubMed article]
    actin binding [IPILink to PubMed article]
    calcium ion binding [IEA]
    protein binding, bridging [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALKLQKKY PELTNEEILT LTDQFNKLDV DGKGYLDQPT TIKAFEDSKK GSYDEVREAI  60
   61 REVNVDSSGR VEPEDFVGIF NVLKKGVEGT EVKKGRITIK GSSSSVSHTI NEEERREFIK 120
  121 HINSVLAGDP DVGSRVPINT ETFEFFDQCK DGLILSKLIN DSVPDTIDER VLNKQRNNKP 180
  181 LDNFKCIENN NVVINSAKAM GGISITNIGA GDILEGREHL ILGLVWQIIR RGLLGKIDIT 240
  241 LHPELYRLLE EDETLDQFLR LPPEKILLRW FNYHLKAANW PRTVSNFSKD VSDGENYTVL 300
  301 LNQLAPELCS RAPLQTTDVL QRAEQVLQNA EKLDCRKYLT PTAMVAGNPK LNLAFVAHLF 360
  361 NTHPGLEPLN EEEKPEIEPF DAEGEREARV FTLWLNSLDV TPSIHDFFNN LRDGLILLQA 420
  421 YDKITPNTVN WKKVNKAPAS GDEMMRFKAV ENCNYAVDLG KNQGFSLVGI QGADITDGSR 480
  481 TLTLALVWQM MRMNITKTLH SLSRGGKTLS DSDMVAWANS MAAKGGKGSQ IRSFRDPSIS 540
  541 TGVFVLDVLH GIKSEYVDYN LVTDGSTEEL AIQNARLAIS IARKLGAVIF ILPEDIVAVR 600
  601 PRLVLHFIGS LMAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 31.39794 Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
    2 View Details [92..614] PSI-BLAST 124.0 CRYSTAL STRUCTURE OF THE ACTIN-CROSSLINKING CORE OF SCHIZOSACCHAROMYCES POMBE FIMBRIN

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • actin binding
    		•  7.50245214720686 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  6.48140000563569 bayes_pls_golite062009
  • actin filament binding
    		•  5.47084878097979 bayes_pls_golite062009
  • tubulin binding
    		•  4.22039137964246 bayes_pls_golite062009
  • microtubule binding
    		•  4.15537672860167 bayes_pls_golite062009
  • binding
    		•  2.8655705697659 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  2.57886434162184 bayes_pls_golite062009
  • protein binding
    		•  2.36488136094907 bayes_pls_golite062009
  • microtubule plus-end binding
    		•  2.0465241878708 bayes_pls_golite062009
  • structural constituent of muscle
    		•  1.32485442580942 bayes_pls_golite062009
  • structural molecule activity
    		•  1.00964022808548 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle