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Protein Overview: SPCC162.02c

General Information:
Name(s) found: SPCC162.02c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • AMP-binding dehydrogenase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 981 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: L-aminoadipate-semialdehyde dehydrogenase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCDSSESVS FSSISKEEDT PIARLLKNAK ETPDHRFISV YNERGIVAKY TYTELLRRVN  60
   61 TIAKFCDDLG LGKTVGIHMG HELDFLCSIF ALWATGRTCV IFNQIWSQQV VRVLVKRLNI 120
  121 SDLLYHEYKP KFEVDTLNAT SLASLPLDID APCIRAGLEP EVALINHSSG STGVPKSMPF 180
  181 LMKKYALGYD YGTPEFMNHL STPMVMATSF ALTTLSWINA LYCNGNLLYP SSSISATCTS 240
  241 EAERLAWNVY YALRAGCERL IILPNLLVLT LQIMPDKEEC FPACKLVAAG GEMVPANMYH 300
  301 TCKRVLPNAT IYPQYGTTES GLVSFLAYNG KDTLHNKELV YFPGKTVKKL MLVTEDNEAV 360
  361 PEKIGCEGFV CVVTDVQSEP YVGDDAETIQ SRNSTFINYD GQPAVRFADL AVWNSYKGKL 420
  421 GITIKGRLGR RVKRNGVFFD LKYFDQVVVG LKEVKDAFSF FIFNRFVLVY VPAYNGVDPV 480
  481 TLKQKLNKEL RDHHLFSSCF PLADIPRNAA GKVDLKSIET YASKCLSVED QRLPVLLNPV 540
  541 AIEISKIASK ILQNPSLEGK DAPLYSCGLD SIHSVRFFHA IQSHFHLEGP IRYNMNSNCT 600
  601 PNSIASIIQK KSYNVSSITY ELLNEDACAL SRTIPKLSIL PTNGQYFLLT GATGYFGRRF 660
  661 LEYLVKLNIS VVCLVRESSD EAAKERLISL VPSLRISSEN IIVWAAHVEE IRFGLDDAKW 720
  721 EFLVENVSRI YHMAAEVHWM KSYQELRPAN VLGTKTVLEL SVMGPKALYF ISGGGQQEVE 780
  781 LDDDTQSAKA SGYALSKYVA ELLCRKISDL GHPLIYVIRP GFIIANDGEI LSRDFFWRFV 840
  841 ATALRMGIWP QSDESQSLVF HISTTDALCM TLTQILEKEA DAYAPLLAYD KFDGDEFACI 900
  901 CESMKNVKLD FVTLEDWLKA LEKDVDEKGE DHPLFALQHA TKFALKSSMT PSNGLRNIYP 960
  961 LSETFLTKEA IANGLENLYI E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..531] PSI-BLAST 121.0 Phenylalanine activating domain of gramicidin synthetase 1
    2 View Details [532..981] PSI-BLAST 26.69897 Crystal structure of full length ArnA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.06902368506559 bayes_pls_golite062009
  • ligase activity
    		•  0.763554068965808 bayes_pls_golite062009
  • ligase activity, forming carbon-sulfur bonds
    		•  0.619465698462354 bayes_pls_golite062009
  • binding
    		•  0.152749814081137 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.03099072397093 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle