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Protein Overview: iws1

General Information:
Name(s) found: iws1 / SPBC19G7.16 [Sanger Pombe]
Description(s) found:
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  • pir||T39847 hypothetical protein SPBC19G7.16 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626706|sp|O42964.1|IWS1_SCHPO RecName: Full=Transcription factor iws1 [NCBI NR]
  • gi|2894272|emb|CAA17070.1| transcription elongation factor complex subunit Iws1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112774|ref|NP_595982.1| transcription elongation factor complex subunit Iws1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • transcription elongation factor complex subunit Iws1 [Sanger Pombe]
  • Transcription factor iws1 OS=Schizosaccharomyces pombe GN=iws1 PE=2 SV=1 [Swiss-Prot]
  • CONSERVED PROTEIN; PREDICTED COILED-COIL REGION: O42964; [pompepVF.fasta]
  • CONSERVED HYPOTHETICAL PROTEIN; POSSIBLE COILED COIL REGION: O42964; [pompepV13]
  • Conserved hypothetical protein [pompep4896]
  • |||conserved protein [pompepnew.fasta]
  • SPBC19G7.16 protein [4896.FASTAC]
  • |||transcription elongation factor complex (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • conserved hypothetical protein [Schizosaccharomyces pombe]gi|2894272|emb|CAA17070.1| transcription elongation factor complex (predicted); involved in transcription elongation (predicted); conserved eukaryotic protein; similar to S. cerevisiae YPR133C [Sc [nrdb_11152004_Chlamydomonas]
  • |||transcription elongation factor complex |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O42964) Conserved hypothetical protein [pompep4896_normal_reversed]
  • |iws1||transcription elongation factor complex subunit Iws1 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Transcription factor iws1 [nr-271106-contam.fasta]
  • SPBC19G7.16 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC19G7.16 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Transcription factor iws1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iws1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 428 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    transcription elongation factor complex [ISSLink to PubMed article]
    spindle [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: regulation of RNA elongation [ICLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    RNA polymerase II transcription elongation factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEEKAELE NMQVESEAKT SENDQTIDTK VDVADVTTHV DEDLDNKEEA LDFSEDELSD  60
   61 LDENQFENFD ESKIGREAEE PTIYNLPTFK KKQEPNTIEE NLEVPRKVRK EQKPRRRRGK 120
  121 RSSTVDALND ELNELGENEE EVLTEQKQLD PTLAAKKELD LQMDAVLKPT RTKKRSNEDN 180
  181 LEQMADDEVL RLREQMRLAA LRDAELNSEQ LPATEKLKML PLVDAVLRKT HLYDTILDNN 240
  241 VLDSVRMWLE PLPDRSLPAL NIQRSLMDIL TKLPIQTEHL RESKIGRIVL FYTISKKPEP 300
  301 FIKRIADNLV SEWSRPIIKR SANYRDRAVG VASFNPEVFQ TRRRRDLAAA ESNDDAQASR 360
  361 TGRTVIPRSI DSRYQVAPRV RLNPTAMTIA GRMKPADTEQ VRKLKAKMKA IRSKSSKKSG 420
  421 VSIEGRGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] MSA 2.120996 View MSA. No confident structure predictions are available.
    2 View Details [143..239] deduced N/A No confident structure predictions are available.
    3 View Details [240..319] FFAS03 1.23 Transcription elongation factor TFIIS N-domain
    4 View Details [320..428] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle