YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPCC23B6.01c

General Information:
Name(s) found: SPCC23B6.01c [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T41241 oxysterol-binding protein family - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74625996|sp|Q9UUA1.1|YJX1_SCHPO RecName: Full=Oxysterol-binding protein homolog C23B6.01c [NCBI NR]
  • gi|5640145|emb|CAB51560.1| oxysterol binding protein (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075624|ref|NP_588124.1| oxysterol binding protein (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • oxysterol binding protein [Sanger Pombe]
  • Oxysterol-binding protein homolog C23B6.01c OS=Schizosaccharomyces pombe GN=SPCC23B6.01c PE=1 SV=1 [Swiss-Prot]
  • OXYSTEROL-BINDING PROTEIN FAMILY: Q9UUA1; [pompepVF.fasta]
  • Oxysterol-binding protein family [pompep4896]
  • |||oxysterol-binding protein family [pompepnew.fasta]
  • SPCC23B6.01c protein [4896.FASTAC]
  • |||oxysterol binding protein (predicted)|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • oxysterol-binding protein family [Schizosaccharomyces pombe]gi|5640145|emb|CAB51560.1| SPCC23B6.01c [Schizosaccharomyces pombe]gi|7492266|pir||T41241 oxysterol-binding protein family - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||oxysterol binding protein |Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (Q9UUA1) Oxysterol-binding protein family [pompep4896_normal_reversed]
  • SPCC23B6.01c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC23B6.01c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 489 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: lipid transport [IEA]
    cellular response to stress [IEPLink to PubMed article]
    steroid biosynthetic process [ISSLink to PubMed article]
    Molecular Function: oxysterol binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKWEIANEV CVDEKQDRDA EEIEDEGKNI ILGIVSQLRP NMDLSKVTFP TFVLEPKSML  60
   61 ERITNFMSHP DLLLNVQKTA DPEMRFLDVV RFYMSGWHIR PRGVKKPLNP ILGETFTGFW 120
  121 KFPPSNSKDP NLQKLHGIAV YAAEQVCHHP PISAYFYLCP EYKVRIDGVV KPRSRFLGNS 180
  181 AASIMEGIAS IKLQDLDEEY LITQPNVYAR GILFGKMRLE LGDHVTVRCP KTDLQADIEF 240
  241 KVKGFISGTY NSIAGKVKRV STGEVLYKIS GKWDSEMSVE SVKTGETRPL LDVSKHDVYL 300
  301 VSARPLEEQG ERESQRLWYK TCQAVIARDQ TTATETKSAI EDRQREEAKQ REIENVQWKP 360
  361 KYFKMIAPEE YILNFDIPNG KSDLEVLCAL DEFIPIFSEV DRIAFHKFLS ENTKPEDSSI 420
  421 HKHSRDASGD STKGFAEHMP APARRRRPQS TASFVTYRSD NGSVDEYHDA QLPDPNTLSK 480
  481 LHEEQDPAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..489] PSI-BLAST 98.045757 Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxysterol binding
    		•  5.22335714957681 bayes_pls_golite062009
  • sterol binding
    		•  4.18891468109664 bayes_pls_golite062009
    		• 3.02967613614595 bayes_pls_golite062009
  • steroid binding
    		•  2.54679035876403 bayes_pls_golite062009
  • binding
    		•  2.33916303349911 bayes_pls_golite062009
  • phosphoinositide binding
    		•  2.2725849852584 bayes_pls_golite062009
  • phospholipid binding
    		•  2.08170907241909 bayes_pls_golite062009
  • cholesterol binding
    		•  1.74311885098566 bayes_pls_golite062009
  • phosphatidylinositol-4,5-bisphosphate binding
    		•  1.72950454023501 bayes_pls_golite062009
  • lipid binding
    		•  1.52883493550389 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle