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Protein Overview: SPBC1604.19c

General Information:
Name(s) found: SPBC1604.19c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • TRAPP complex subunit Trs85 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 658 amino acids

    Gene Ontology:
    Cellular Component: TRAPP complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cell division site [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    autophagy [ISSLink to PubMed article]
    peroxisome degradation [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIATNFITR SLSEIAPNAS QSSLHVTPSS VSNNAFGLKL RQLISDTYCP HIFIMASDDT  60
   61 ENFMKRKGFD DFASFIRPFG DRIFQSSTNN SAISKETLDS RIFDNDHDSI RFVPMEAVQV 120
  121 PRQWKRNKAW NTENGLENCA NSRFAPGGDI DSFRVLSQKL IEEWVQSGSN NYPENGFLNP 180
  181 ILDYLKLLLS GNPVAEHETF SHPVGCLIVI TSHNTNPMAT VMRLFKEINN APFPNFISKE 240
  241 ILHYYLFIHD EDNNDLSNSK QIFQQMRRSL GANSHFIRLR SNYISAKPLD TDRYDTSSIQ 300
  301 SLKNAPRDSM ESESFCSSSD DAKPITFVTK NLRKFPIPEW RSSLEVQAES EQSCLPLYPL 360
  361 LPVEEVEGMK KFVQTMLYDS IYPFMQRCVR AWEEDLTPQY GNLTTRLLFA SKKYWSRNHS 420
  421 SHSQGNYDPL SLIYSSEKQE SIKRKMADFS FMLRDYKRAY EIYDEIRNTF SQDKAWNYLA 480
  481 SCEEIQIICL LMQNRNISLK SQISYLNKWF DEMVYIYAVR LHSFYYTFRS VLVTSLLLSL 540
  541 KPAFSIDFAA SWLAKILEPG PISLNPFETS FLNTTIAGMY SNKEHVGVTD GNRRRKAAFW 600
  601 FAYSAGFWRD CGHCKMAEIC WNLANRVYSK SGWESLSEHM LDLKPTLSEN FRVKNTFH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A No confident structure predictions are available.
    2 View Details [89..227] deduced N/A No confident structure predictions are available.
    3 View Details [228..337] deduced N/A Confident ab initio structure predictions are available.
    4 View Details [338..579] deduced N/A No confident structure predictions are available.
    5 View Details [580..658] MSA 1.016987 View MSA. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle