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Protein Overview: SPBC19G7.07c

General Information:
Name(s) found: SPBC19G7.07c [Sanger Pombe]
Description(s) found:
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  • pir||T39838 hypothetical protein SPBC19G7.07c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626702|sp|O42955.1|YGM7_SCHPO RecName: Full=Pentatricopeptide repeat-containing protein C19G7.07c [NCBI NR]
  • gi|2894263|emb|CAA17061.1| mitochondrial group I intron splicing factor (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112765|ref|NP_595973.1| conserved fungal protein [Schizosaccharomyces pombe] [NCBI NR]
  • conserved fungal protein [Sanger Pombe]
  • Pentatricopeptide repeat-containing protein C19G7.07c OS=Schizosaccharomyces pombe GN=SPBC19G7.07c PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SIMILAR TO S. CEREVISIAE YGR150C; CONTAINS 2 PPR DOMAINS: O42955; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPBC19G7.07c protein [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2894263|emb|CAA17061.1| hypothetical protein; PPR domains; predicted N-terminal signal sequence; similar to S. cerevisiae YGR150C [Schizosaccharomyces pombe]gi|7491481|pir||T39838 hypothetical protein S [nrdb_11152004_Chlamydomonas]
  • (O42955) Hypothetical protein [pompep4896_normal_reversed]
  • |||mitochondrial group I intron splicing factor |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC19G7.07c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC19G7.07c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • |ppr3|dmr1|mitochondrial PPR repeat protein Ppr3|Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 687 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: Group I intron splicing [ISS]
    mitochondrion organization [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKCSGSLT LLAVRRFCGP CRRLHYHKDN PNNINIAKNL LNNNIQARCS TNEASWKLAQ  60
   61 KELDLKIREY EQKLKDVKLN DINKKSPLNI PDEVWTKFIS EVNSYDKEKE NHLSTGNHEL 120
  121 RRTTPLKIGP LLLTRIGLLK SKNTASNNYS VDHIVSNLAN DNTLLNRQVS TEEWNSHLRH 180
  181 LLNIPKCFLG VDIVEIVNFF NYLPQTVISK SSLEIWKAVE ESGMKVMPDL LVLLMESTNA 240
  241 SGDFRKTVQL YHLYQKSNAP PNGLVYQSYA IALSSLGKHK DLVALYSEQK SVSITPSKDF 300
  301 LNACIKAFSR TKEFTKAWEV FNFMKFTATS ISPSAETYGL MIQICSSQYN PEKALDLYNE 360
  361 MKLRPIDPLT PTTFVINNLI HALATDVRFQ TVAFSLLQDL SHYGLRPNHS TLYELIRLIA 420
  421 YSGKLDYMKD ILDNFWVRQK LLPSILKVEQ IFHFIFRALI SAEVQTSSVT PDYTHFKEEV 480
  481 RKIIDSSKEP LIPFLKRSTL TENDLFLNAI YTFEYAKRKF PEALNSRLVT DFLNIFLERG 540
  541 SVQLFKEIYQ LEFREMSTME GSSMKVAKIT LTYIYAIKLA LLFNDFEFGY AAWQEYWHCK 600
  601 IHKLLPKEDA SYEQKVVLLT LSLLSKNKHT SLARSLLLSH LDKGWTWNKH SLGFMRKMCS 660
  661 VMNDQATVYL IDSITNEIGI NQRFTRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..154] PSI-BLAST 3.522879 Clathrin D6 Coat
    2 View Details [155..687] PSI-BLAST 6.69897 No description for 2gw1A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle