YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC1861.04c

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..475] PSI-BLAST 54.045757 No description for 2ooeA was found.
2 View Details [476..575] deduced N/A No confident structure predictions are available.
3 View Details [576..852] PSI-BLAST 28.30103 No description for 2ghpA was found.
4 View Details [853..1014] PSI-BLAST 37.0 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 2.76684454218635 bayes_pls_golite062009
  • binding
  • 2.57186536498101 bayes_pls_golite062009
  • protein binding
  • 1.83529176977066 bayes_pls_golite062009
  • transcription regulator activity
  • 1.26149030245805 bayes_pls_golite062009
  • DNA binding
  • 0.9531600253493 bayes_pls_golite062009
  • nucleic acid binding
  • 0.93037889019021 bayes_pls_golite062009
  • signal sequence binding
  • 0.8574224889202 bayes_pls_golite062009
  • transcription factor activity
  • 0.374364600772076 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • snRNA binding
  • 4.06596327298973 bayes_pls_golite062009
  • nucleic acid binding
  • 3.81920018903278 bayes_pls_golite062009
  • binding
  • 3.49612884560266 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
  • 3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • protein binding
  • 1.32954276279597 bayes_pls_golite062009
  • structural molecule activity
  • 1.29928829870122 bayes_pls_golite062009
  • transcription regulator activity
  • 1.07788694919471 bayes_pls_golite062009
  • DNA binding
  • 0.978604858165557 bayes_pls_golite062009
  • snoRNA binding
  • 0.642109402325711 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.425042944899091 bayes_pls_golite062009
  • transcription factor activity
  • 0.234742017105535 bayes_pls_golite062009
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle