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Protein Overview: SPAC664.03

General Information:
Name(s) found: SPAC664.03 [Sanger Pombe]
Description(s) found:
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  • gi|74625822|sp|Q9US06.1|PAF1_SCHPO RecName: Full=RNA polymerase II-associated protein 1 homolog [NCBI NR]
  • gi|6692010|emb|CAB65804.1| RNA polymerase II associated Paf1 complex (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114363|ref|NP_593451.1| RNA polymerase II associated Paf1 complex (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • pir||T50233 probable DNA-directed RNA polymerase II regulator [imported] - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • RNA polymerase II associated Paf1 complex [Sanger Pombe]
  • RNA polymerase II-associated protein 1 homolog OS=Schizosaccharomyces pombe GN=SPAC664.03 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE DNA-DIRECTED RNA POLYMERASE II REGULATOR: Q9US06; [pompepVF.fasta]
  • Putative DNA-directed RNA polymerase II regulator [pompep4896]
  • |||possibly involved in regulation of transcription elongation (PMID 11927560) [pompepnew.fasta]
  • SPAC664.03 protein [4896.FASTAC]
  • |||involved in RNA elongation from Pol II promoter (regulation) (predicted) (PMID 11927560)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative DNA-directed RNA polymerase II regulator [Schizosaccharomyces pombe]gi|6692010|emb|CAB65804.1| SPAC664.03 [Schizosaccharomyces pombe]gi|11359236|pir||T50233 probable DNA-directed RNA polymerase II regulator [imported] - fission yeast (Schizosac [nrdb_11152004_Chlamydomonas]
  • |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q9US06) Putative DNA-directed RNA polymerase II regulator [pompep4896_normal_reversed]
  • SPAC664.03 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC664.03 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 457 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Cdc73/Paf1 complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: histone methylation [ISSLink to PubMed article]
    regulation of RNA elongation [ICLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: RNA polymerase II transcription elongation factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQENRRQDYI LRVRYHNPLP PPPFPPKLIN IPNPVKQYAL PNFVSTLVQE KKIPIENDIE  60
   61 LGMPLDLAGI TGFFEGDTSW MHSDLSSVNL DPIDRSLLKV AGGSGSTHLE VPFLRRTEYI 120
  121 SSEVARAASN RGNLRLTAST SKALAEQRGR SLREVPKQLE AINESFDVVQ QPLEQLKHPT 180
  181 KPDLKPVSAW NLLPNTSMAG IQHLMLRVAD DLSERSHSYS SLVNLQEGHN LTKRHEVALF 240
  241 MPSSAEGEEF LSYYLPSEET AEEIQAKVND ASADVHEPFV YNHFRNFDAS MHVNSTGLED 300
  301 LCLTFHTDKD HPEANQVLYT PIYARSTLKR RHVRAPVSLD AVDGIELSLR DLNDEESLQL 360
  361 KRARYDTFGL GNIKDLEEEE EKLRSVEGSL NEELSEEEKP AESREQLESA EQTNGVKPET 420
  421 QAQNMSASES QANSPAPPVE EGNTQPSPVE QLQNEED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..272] deduced N/A No confident structure predictions are available.
    2 View Details [273..371] deduced N/A No confident structure predictions are available.
    3 View Details [372..457] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle