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Protein Overview: snu13

General Information:
Name(s) found: snu13 / SPAC607.03c [Sanger Pombe]
Description(s) found:
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  • gi|74626899|sp|O74690.1|SNU13_SCHPO RecName: Full=13 kDa ribonucleoprotein-associated protein [NCBI NR]
  • gi|6624599|emb|CAB63790.1| U3 snoRNP-associated protein Snu13 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|3676762|gb|AAC62085.1| SNU13 snRNP subunit homolog [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114504|ref|NP_593592.1| U3 snoRNP-associated protein Snu13 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • pir||T50223 rs6/l7a ribosomal protein homolog [imported] - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • U3 snoRNP-associated protein Snu13 [Sanger Pombe]
  • 13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE PRE-MRNA SPLICING FACTOR; U4/U6.U5 SNRNP COMPONENT; SIMILAR TO S. CEREVISIAE SNU13: ;N0ACC; [pompepVF.fasta]
  • PUTATIVE PRE-MRNA SPLICING FACTOR; COMPONENT OF THE U4/U6.U5 SNRNP COMPONENT; SIMILAR TO S. CEREVISIAE SNU13: ;N0ACC; [pompepV13]
  • RS6/L7A ribosomal protein homolog [pompep4896]
  • |snu13||putative pre-mRNA splicing factor [pompepnew.fasta]
  • SNU13 snRNP subunit homolog (Snu13 protein) (Spac607.03c protein) [4896.FASTAC]
  • |snu13||U4/U6.U5 snRNP component|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative splicing factor; rs6/l7a ribosomal protein homolog [Schizosaccharomyces pombe]gi|3676762|gb|AAC62085.1| SNU13 snRNP subunit homolog [Schizosaccharomyces pombe]gi|6624599|emb|CAB63790.1| SPAC607.03c [Schizosaccharomyces pombe]gi|11276718|pir||T [nrdb_11152004_Chlamydomonas]
  • (O74690) RS6/L7A ribosomal protein homolog [pompep4896_normal_reversed]
  • |snu13||U3 snoRNP-associated protein Snu13|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC607.03c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC607.03c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SNU13 snRNP subunit homolog [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • 13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snu13 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 125 amino acids

    Gene Ontology:
    Cellular Component: U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: maturation of SSU-rRNA [ISSLink to PubMed article]
    nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNPKAFPL ADSGLTQQIL DLVQQASHYK QLRKGANEAT KTLNRGISEF IVMAADTEPI  60
   61 EILLHLPLLC EDKNVPYVFV PSKAALGRAC GVSRPVISAS ITTNEASDLL PQIQAIKLAI 120
  121 EKLLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 33.30103 No description for 1zwzA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 5.75333813716704 bayes_pls_golite062009
  • RNA binding
    		•  5.39762744650785 bayes_pls_golite062009
  • snoRNA binding
    		•  4.95788328272916 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  3.68798692352408 bayes_pls_golite062009
  • structural molecule activity
    		•  3.12718364266877 bayes_pls_golite062009
  • mRNA binding
    		•  2.62944559104613 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.39301463005357 bayes_pls_golite062009
  • binding
    		•  2.34187530323842 bayes_pls_golite062009
  • protein binding
    		•  0.381324299701367 bayes_pls_golite062009
  • catalytic activity
    		•  0.264002643439785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle