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Protein Overview: pep12

General Information:
Name(s) found: pep12 / SPBC31E1.04 [Sanger Pombe]
Description(s) found:
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  • pir||T40201 syntaxin (T-SNARE), vacuolar - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|62900715|sp|O94651.1|PEP12_SCHPO RecName: Full=Syntaxin pep12 [NCBI NR]
  • gi|4494110|emb|CAB39138.1| SNARE Pep12 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19111892|ref|NP_595100.1| SNARE Pep12 [Schizosaccharomyces pombe] [NCBI NR]
  • SNARE Pep12 [Sanger Pombe]
  • Syntaxin pep12 OS=Schizosaccharomyces pombe GN=pep12 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE SYNTAXIN (T-SNARE), VACUOLAR: O94651; [pompepVF.fasta]
  • Syntaxin (T-SNARE), vacuolar [pompep4896]
  • |pep12||putative syntaxin [pompepnew.fasta]
  • Pep12 protein (Spbc31e1.04 protein) [4896.FASTAC]
  • |pep12||SNARE (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • syntaxin (T-SNARE), vacuolar [Schizosaccharomyces pombe]gi|4494110|emb|CAB39138.1| SPBC31E1.04 [Schizosaccharomyces pombe]gi|7493454|pir||T40201 syntaxin (T-SNARE), vacuolar - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |pep12||SNARE |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O94651) Syntaxin (T-SNARE), vacuolar [pompep4896_normal_reversed]
  • |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Syntaxin pep12 [nr-271106-contam.fasta]
  • SPBC31E1.04 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC31E1.04 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 317 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Golgi apparatus [ISSLink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: vesicle-mediated transport [TASLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    [NOT]Golgi to vacuole transport [IMPLink to PubMed article]
    Molecular Function: SNAP receptor activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVDLEQGR HKIEQNGDFP ALASSIAQEI HALRGNTAAI HRYLVNNLTK NLHEVLEQSR  60
   61 ELSQKVRSDL VRLANIKDTK YGEEASSFAL SKLTRDFNTV LAELQRVQQK CAQQESDSVA 120
  121 AAQAALNQDV GQHFIEEEER NVSLSNNSSG QRQPLTESKI SNSQLEYQQR LINERQGEIE 180
  181 NLTQGINELN EIFRDLSTII NEQGELVTNI EYNVGNTSTN TKNASRQLQI ANEHSRKARK 240
  241 RSFCFLKSFA MFSSFRSQNA NLYNLNSIRR NLTKHFRNRV LVSLYVSCSS RVWSLPYVHA 300
  301 FKIAYSIQFL DTDYFFT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..317] PSI-BLAST 23.154902 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNAP receptor activity
    		•  2.83778981988519 bayes_pls_golite062009
  • protein binding
    		•  2.01524199895183 bayes_pls_golite062009
  • binding
    		•  1.88170908543488 bayes_pls_golite062009
  • protein transporter activity
    		•  0.928646845054548 bayes_pls_golite062009
  • transporter activity
    		•  0.487715383686856 bayes_pls_golite062009
  • SNARE binding
    		•  0.44377480710212 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.0443963926233321 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle