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Protein Overview: SPAC24C9.11

General Information:
Name(s) found: SPAC24C9.11 [Sanger Pombe]
Description(s) found:
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  • pir||T38352 hypothetical protein SPAC24C9.11 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74581931|sp|O13971.1|SGD1_SCHPO RecName: Full=Suppressor of glycerol defect protein 1 [NCBI NR]
  • gi|2330794|emb|CAB11268.1| eIF4 binding protein, human NOM1 ortholog [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114948|ref|NP_594036.1| MIF4G/MA4 domain protein [Schizosaccharomyces pombe] [NCBI NR]
  • MIF4G/MA4 domain protein [Sanger Pombe]
  • Suppressor of glycerol defect protein 1 OS=Schizosaccharomyces pombe GN=sgd1 PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; POSSIBLY INVOLVED IN SIGNAL TRANSDUCTION; SIMILAR TO S. CEREVISIAE SGD1: O13971; [pompepVF.fasta]
  • HYPOTHETICAL PROTEIN; POSSIBLY INVOLVED IN SIGNAL TRANSDUCTION BY SIMILARITY TO YEAST SGD1: O13971; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||MIF4G domain [pompepnew.fasta]
  • SPAC24C9.11 protein [4896.FASTAC]
  • |||MIF4G domain|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2330794|emb|CAB11268.1| SPAC24C9.11 [Schizosaccharomyces pombe]gi|7490997|pir||T38352 hypothetical protein SPAC24C9.11 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O13971) Hypothetical protein [pompep4896_normal_reversed]
  • |||eIF4 binding protein, human NOM1 ortholog|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC24C9.11 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC24C9.11 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |||MIF4G/MA4 domain protein|Schizosaccharomyces pombe|chr 1|||Manual [spombe-190209-contam.fasta]
  • |||ribosome small subunit biogenesis protein |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Suppressor of glycerol defect protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgd1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 775 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: RNA metabolic process [IEA]
    translation [NAS]
    Molecular Function: eukaryotic initiation factor 4E binding [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPIKKSRSL KLPKSILEEI GESDSSARRG KRNHNLPHRE KRKFARISRG KNGYENRKIT  60
   61 EEGDSKSSEL NDDYLDAHRK SSTKKKSSQN KQAKESKLLD PIAFQHKIAL EEDDREIAHL 120
  121 EKMLGIKSKD KSAHSKIDKE FGWLLEDLDQ EIDDIGVPGT EDPSYGHSED SEVSDDTGDH 180
  181 GSVDELESER EGNSGEEEEE FHGFESNSDE FHQPETKPIR MDPLKPAVPS LPNANVGSKY 240
  241 VPPSLRKKLG GDKESEDALR LRRKLQGSLN KLSIANISSI IKEIEVLYME NSRHSVTSTI 300
  301 TNLLLQTVMG RESMLDQLAI VYAALATALY RIVGNDFGAH LLQTLVERFL QLYKSKEKEP 360
  361 LSSHKETSNL IVFFVELYNF QLVSCVLVYD LIRLFLRSLT ELNVEMLLKI VLNCGGQLRS 420
  421 DDPTSLQDIV TEMNLLLASA DPSTISVRTK FMVESITNLK ENKKTKVANA SAQSKFEAVN 480
  481 QLKKFLGSLG NRSLNAREPL RVTLEDIEQI ETKGRWWLVG ASWNNVPSGD NTLSTEALQD 540
  541 KKKSEELTAH SKILQAAKKL RLNSTLRTSI FVALVGSEDY IDAWERVLKL HLKRNQLPEI 600
  601 AYVILHCVGN EKLYNPFYGL VALKCCTLQH NLKKSFQFSL WDFFNELQPD DDSEEREISM 660
  661 RRIVNLAKLY ASLVIEAAQP LTILKHVDFM AINAQMQTFL LVFFTDIILG VKDDLQLVKI 720
  721 FENCKAEKNL SSKVDWFLKT YVRKNPLVDN SKKALFKSNL AMASAILQSI SKEEI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] MSA 3.223996 View MSA. No confident structure predictions are available.
    2 View Details [136..222] deduced N/A No confident structure predictions are available.
    3 View Details [223..489] PSI-BLAST 46.522879 Eukaryotic initiation factor eIF4G
    4 View Details [490..775] FFAS03 1.78 CBP80, 80KDa nuclear cap-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.47395644967726 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.72695422276859 bayes_pls_golite062009
  • structural molecule activity
    		•  1.66077840765881 bayes_pls_golite062009
  • protein binding
    		•  1.04044934052933 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.821718728559452 bayes_pls_golite062009
  • DNA binding
    		•  0.797151158461249 bayes_pls_golite062009
  • translation regulator activity
    		•  0.557943239197724 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.531544577163632 bayes_pls_golite062009
  • RNA binding
    		•  0.40024158562931 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.136474994339929 bayes_pls_golite062009
  • transcription factor activity
    		•  0.123371336741999 bayes_pls_golite062009
    4
    Term Confidence Notes
  • binding
    		•  2.36800795249393 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.67566088591721 bayes_pls_golite062009
  • structural molecule activity
    		•  1.66038601649515 bayes_pls_golite062009
  • protein binding
    		•  0.914877292844892 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.845665181662967 bayes_pls_golite062009
  • DNA binding
    		•  0.806448013051712 bayes_pls_golite062009
  • translation regulator activity
    		•  0.378889783888265 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.348192604482187 bayes_pls_golite062009
  • RNA binding
    		•  0.243875756041061 bayes_pls_golite062009
  • transcription factor activity
    		•  0.131703572961748 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle