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Protein Overview: SPBC16H5.08c

General Information:
Name(s) found: SPBC16H5.08c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • ribosome biogenesis ATPase, Arb family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: ribosomal small subunit export from nucleus [ISS]
    ribosome biogenesis [ISS]
    Molecular Function: ATPase activity [ISSLink to PubMed article]
    ATP binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSASKLK REAKKAERLA AKGESVKPSK KNGTKNGKDK EVDGVTKDLS ELSTSDPIFE  60
   61 RSASGVLTSQ PMSRDIKIDS YTLSFHGRLL IENATIELNH GQRYGLLGDN GSGKSTFLES 120
  121 VAARDVEYPE HIDSYLLNAE AEPSDVNAVD YIIQSAKDKV QKLEAEIEEL STADDVDDVL 180
  181 LESKYEELDD MDPSTFEAKA AMILHGLGFT QEMMAKPTKD MSGGWRMRVA LSRALFIKPS 240
  241 LLLLDEPTNH LDLEAVVWLE NYLAKYDKIL VVTSHSQDFL NNVCTNIIDL TSKKQLVYYG 300
  301 GNFDIYMRTK EENETNQMKA YLKQQEEIAH IKKFIASAGT YANLVRQAKS KQKIIDKMEA 360
  361 AGLVEKPEPP RQFSFEFDEV RKLPPPIIAF NDVAFSYDGN LDHALYRDLS FGIDMDSRVA 420
  421 IVGKNGTGKS TLLNLITGLL IPIEGNVSRY SGLKMAKYSQ HSADQLPYDK SPLEYIMDTY 480
  481 KPKFPERELQ QWRSVLGKFG LSGLHQTSEI RTLSDGLKSR VVFAALALEQ PHILLLDEPT 540
  541 NHLDITSIDA LAKAINVWTG GVVLVSHDFR LIGQVSKELW EVKDKKVVKL DCSIEEYKKS 600
  601 MAKEVQSRDT TAKVKHLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..74] PSI-BLAST 73.0 No description for 2hydA was found.
    2 View Details [75..484] PSI-BLAST 38.69897 No description for 2iw3A was found.
    3 View Details [485..618] PSI-BLAST 29.69897 No description for 2qi9C was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle