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Protein Overview: pas4

General Information:
Name(s) found: pas4 / SPBC17A3.10 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • peroxisomal ubiquitin-protein ligase E3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: peroxisomal membrane [ISSLink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: peroxisome organization [ISSLink to PubMed article]
    protein ubiquitination [ISSLink to PubMed article]
    Molecular Function: ubiquitin-protein ligase activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSAHIDPL QIILCTEIDE ACIQFIKSQI EGIARACGPR MQANFEGVLI PYVDVLGKFL  60
   61 YRACCLRYAT MGEEAARIVL AKQDRSKGLV LATTGERMTS LIFSLVIDLV GVHVNKLLKQ 120
  121 ASYSSSFKLP FGLRNLLPEA VISKEKHLVY ILNSFKPILL KLVSIIRFLC LTMKGHCATV 180
  181 SQLLLGLKYI SLDEINPEEK KKVLTLLLLL GSRLIASILQ HSNSYFDQHT ISSITDERDL 240
  241 EDKNKLPFIP EGNRKCSLCM EFIHCPAATE CGHIFCWSCI NGWTSKKSEC PLCRAFSSPS 300
  301 KIILLR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] MSA 2.448996 View MSA. No confident structure predictions are available.
    2 View Details [175..306] PSI-BLAST 11.09691 Cbl; N-terminal domain of cbl (N-cbl); CBL

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.55003340159545 bayes_pls_golite062009
  • protein binding
    		•  2.35325421236395 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  2.20438586677555 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.97264874084155 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.26357595913158 bayes_pls_golite062009
  • molecular adaptor activity
    		•  0.68555837423221 bayes_pls_golite062009
  • signal transducer activity
    		•  0.644330423191792 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.644330423191792 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.293268642733772 bayes_pls_golite062009
  • protein binding, bridging
    		•  0.230308623372106 bayes_pls_golite062009
  • kinase activity
    		•  0.193243470329802 bayes_pls_golite062009
  • protein kinase activity
    		•  0.0865488336042732 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle