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Protein Overview: SPBC3B9.12

General Information:
Name(s) found: SPBC3B9.12 [Sanger Pombe]
Description(s) found:
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  • pir||T40351 hypothetical protein SPBC3B9.12 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74644176|sp|O43041.1|TRS23_SCHPO RecName: Full=Transport protein particle subunit trs23; Short=TRAPP subunit trs23 [NCBI NR]
  • gi|2950478|emb|CAA17792.1| TRAPP complex subunit Trs23 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113462|ref|NP_596670.1| TRAPP complex subunit Trs23 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • TRAPP complex subunit Trs23 [Sanger Pombe]
  • Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe GN=trs23 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE PROTEIN OF THE TRAPP (TRANSPORT PROTEIN PARTICLE) COMPLEX; SIMILAR TO S. CEREVISIAE TRS23: O43041; [pompepVF.fasta]
  • PUTATIVE PROTEIN OF THE TRAPP (TRANSPORT PROTEIN PARTICLE) COMPLEX; BY SIMILARITY TO YEAST TRS23: O43041; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||putative protein of the TRAPP (Transport protein Particle) complex [pompepnew.fasta]
  • SPBC3B9.12 protein [4896.FASTAC]
  • |||TRAPP (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2950478|emb|CAA17792.1| SPBC3B9.12 [Schizosaccharomyces pombe]gi|7491644|pir||T40351 hypothetical protein SPBC3B9.12 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O43041) Hypothetical protein [pompep4896_normal_reversed]
  • |trs23||TRAPP complex subunit Trs23 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC3B9.12 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC3B9.12 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |||TRAPP complex subunit Trs23 |Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 132 amino acids

    Gene Ontology:
    Cellular Component: TRAPP complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    endoplasmic reticulum [IEA]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [RCALink to PubMed article]
    regulation of Rab GTPase activity [IC]
    Molecular Function: Rab guanyl-nucleotide exchange factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHALIIINRA GSLIFQREFG SSPTALTPNE YLVLAGTIHG VHAISTQISP LPGSSGIQLL  60
   61 EAGTFNMHIL QTHTGMKFVL FTEKKTTNAR LQLQKFYELY SDYVLKNPFY TLEMPIKCQL 120
  121 FDEQLKRYID SH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 39.69897 No description for 2j3tD was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle