YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3B9.12
Organism:	Schizosaccharomyces pombe
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3B9.12.

Description	E-value	Query Range	Subject Range
gi\|11282327, gi\|... - gi\|7406424\|emb\|CAB85533.1\| putative protein [Arabidopsis thaliana], gi\|28827482\|gb\|AAO50585.1\| unkno...	166.0	[0..1]	[131..4]
gi\|218199540 - gi\|218199540\|gb\|EEC81967.1\| hypothetical protein OsI_25868 [Oryza sativa Indica Group] gi\|28971996, gi\|... - gi\|34901426\|ref\|NP_912059.1\| synbindin-like protein [Oryza sativa (japonica cultivar-group)], gi\|289...	160.0	[0..1]	[131..6]
gi\|73954670 - gi\|73954670\|ref\|XP_536548.2\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S...	159.0	[0..5]	[130..85]
gi\|55637071 - gi\|55637071\|ref\|XP_508802.1\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S... TPPC4_PONPY - Trafficking protein particle complex subunit 4 - Pongo pygmaeus (Orangutan) TPPC4_PONAB - Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1 TRAPPC4 - trafficking protein particle complex 4	159.0	[0..5]	[130..85]
TPPC4_MOUSE - Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1	159.0	[0..5]	[130..85]
tr\|M3VW28\|M3VW28... - Trafficking protein particle complex 4 OS=Felis catus GN=TRAPPC4 PE=4 SV=1 gi\|149716953 - gi\|149716953\|ref\|XP_001503119.1\| PREDICTED: similar to Trafficking protein particle complex 4 [Equus... TPPC4_BOVIN - Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1	159.0	[0..5]	[130..85]
gi\|113197680 - gi\|113197680\|gb\|AAI21585.1\| Trappc4 protein [Xenopus tropicalis]	158.0	[0..5]	[130..68]
gi\|71051670, gi\|... - gi\|71051670\|gb\|AAH98628.1\| Trafficking protein particle complex 4 [Rattus norvegicus], gi\|62653423\|r... tr\|G3I977\|G3I977... - Trafficking protein particle complex subunit 4 OS=Cricetulus griseus GN=H671_4g12993 PE=4 SV=1	158.0	[0..5]	[130..85]
gi\|53136776, gi\|... - gi\|57530486\|ref\|NP_001006320.1\| trafficking protein particle complex 4 [Gallus gallus], gi\|53136776\|...	155.0	[0..8]	[130..88]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHALIIINRA GSLIFQREFG SSPTALTPNE YLVLAGTIHG VHAISTQISP LPGSSGIQLL  60
   61 EAGTFNMHIL QTHTGMKFVL FTEKKTTNAR LQLQKFYELY SDYVLKNPFY TLEMPIKCQL 120
  121 FDEQLKRYID SH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2j3tD
Description:	No description for 2j3tD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits