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Protein Overview: SPCC1259.12c

General Information:
Name(s) found: SPCC1259.12c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • Ran GTPase binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 486 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    integral to membrane [IEA]
    GID complex [ISS]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [ISSLink to PubMed article]
    signal transduction [RCALink to PubMed article]
    negative regulation of gluconeogenesis [IC]
    vacuolar protein catabolic process [ISSLink to PubMed article]
    Molecular Function: Ran GTPase binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTPKNLEK QPINFDNLPL YLQGTNYGEN VLRSDPRWLK WEKYLREFDM TREGNVTNTP  60
   61 KAIPSSWNPN DKSDSLELMN NNMGVYFFGP EAGTEHDAAS VKADHAIPSN TSIYYYEIQI 120
  121 LSRGKEGKMG VGFCRKSMQT NRLPGCTAES WGYHGNSGEK FNCSKTGEAY GPEFTTGDII 180
  181 GCGVNFINRT IFYTKNGAYL GVAFKKVSDV LYPVIGLKSH GEHVEVNFGQ NPFLYDIDYA 240
  241 IQMEKNKLFE QATKSPKQEE LKQRQEFLNE LISSFLLNNG FVETAKKFCP ENTEVSDASI 300
  301 RKEISSMLAN GQLDLAMTKI DCQYPVAIQE CPDLIMSLRF LRFLQLVKVT HDQRLTKSKG 360
  361 TKQISQEEDL RILQPLMNYA QELSNDYEHT KSSNLQAMIK LSMGLLAYFD PFSSPLSFFM 420
  421 SSDFHKYMAE QINCLLLELT GHSPDSELRR FLQHTPQEVL YLGFRKYFIT HFVRFVVCFT 480
  481 FFLFKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..258] PSI-BLAST 26.0 No description for 2fnjA was found.
    2 View Details [259..360] MSA 3.200994 View MSA. Confident ab initio structure predictions are available.
    3 View Details [361..486] MSA 4.129989 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.80812953968012 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.339759264844777 bayes_pls_golite062009
  • protein binding
    		•  0.0610567034718369 bayes_pls_golite062009
  • DNA binding
    		•  0.0194248464122282 bayes_pls_golite062009
  • hydrolase activity
    		•  0.00724990918244621 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.52

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle