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Protein Overview: sec26

General Information:
Name(s) found: sec26 / SPBC146.14c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • coatomer beta subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 940 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    ER to Golgi transport vesicle [ICLink to PubMed article]
    COPI vesicle coat [ISSLink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCWTLVQQD FLEAPSVDAL KTSLESKNDY VKISAMKTIL RVVINGDSLP SILMHVIRFV  60
   61 MPSRNKELKK LLYYYWEVCP KYNNDGTMKQ EMILACNSFR NDLQHPNEFI RGATLRFLCK 120
  121 LKEPELLDPL IPTVRQCLEH RHAYVRKNAI LAVFSIYQVS NHLIPDAASL AEDFLAAESE 180
  181 GTCKRNALIV LFTIDPEKAK AWLLANFEQI PSLNASSLLV IIEFIRKVVL TKADGLEKLR 240
  241 FQSLLVSLTA TNNSSVVFEA ATSVINVFPD AESLKLAASR LLALADREAD NNAKLIMLDR 300
  301 ISQLAARDKS ILEDLITDVI PFLSSSDFDV CEKAISIIMG LVSSRNVEDI LNHFQKELTK 360
  361 SNGETEKDDG RRRALTKAIH SCAINFPHTA ATAIQYLLSH ISDFQSKSAS SVLSFIKEVM 420
  421 EKFPDLRSSN ITKLLLSLKE LRAGKIFRGV IWIAGEYCLT EDDIRVAWKS IRASLGEVPI 480
  481 LASEEQLLKD VSNVPEDDLL IDISAPASTS RKVLPDGTYA TESAVTSEAL SAARLEAVKA 540
  541 SKKPPLRTQI LSGDYYLAAV LASALTKLVM RFARLSFDKE RLNALKAEAC LIMTSIIRVG 600
  601 QSKFVKYTID DDSVERIMNC IRAIYSFEEL PEFQTVFLDD MRKAFSSLVA QSDKRQKEAD 660
  661 LLVNGSDAVQ ADELLNIRQF QRVIEEKQDL NFESDIIQAT NDGMVVEDLA SKLDHIVQLA 720
  721 GFTDPVYCEA YVKIQQFDII LDILLVNRTD TTLQNLSVDL ATLGDLKVVE RPPPMNLGPH 780
  781 AFKSVQATVK VSSTESAVIF GNIVYGGKAS DEDKIVVLNG IPVNIIDYIK PAFIPESQFR 840
  841 SMWTEFEWEN KVDISSNEDI SLYDFLHKIM KKTNMNCLTP DASLRGDCGF LSANLYACSI 900
  901 FGEDALMSLS VEKSVSGPIS GHVRIRSKTQ GIALSLGAFV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..625] PSI-BLAST 82.522879 AP1 clathrin adaptor core
    2 View Details [626..940] PSI-BLAST 49.522879 Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle