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Protein Overview: phf1

General Information:
Name(s) found: phf1 / SPCC4G3.07c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • PHD finger containing protein Phf1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 461 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Lsd1/2 complex [IDALink to PubMed article]
    Biological Process: cellular response to heat [IEPLink to PubMed article]
    histone H3-K9 demethylation [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    nucleosome binding [IDALink to PubMed article]
    small conjugating protein ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKNFFDEG KSYGVNDYAG FHFENGADSS LPQVSAQGVV RETDSSNFDA SPVASGSGIS  60
   61 DVGPFGADFH QLQQHVQTPY GGMTMPASSS SGATSVPPEQ DPSLSVSFNR LPKSASTKTK 120
  121 NGRIRSSRRE DDNRIPFYDL DVAEGAEDDL QEDFHVEGMK TKSGRKIQRP VAYNPNATAL 180
  181 KRKSRKVDMV TLCSVCQRGH SPLSNRIVFC DGCNSPYHQL CHHPPIDDAT VQDVDAEWFC 240
  241 MKCQYRRAKQ PLETGMTAQD LGLSESDKKM YLSSLPTPHL ADLILFCEKS YPSLPIYNPR 300
  301 TRELLGEIRH QLLVSSERQQ ISLQERLHAK QDEAPSDEPA PVPYTASYVA NSGTLYDYPT 360
  361 LIRLAIRNTL SPSKDEIFNW LAQNVPLLPT FHDSASEAIR WMVNKGQLVR SGSIYQIATV 420
  421 EEYPHLQPSL LPTFQRNRKV PKLVPVSFPT DDPQNLCATV L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] deduced N/A No confident structure predictions are available.
    2 View Details [80..329] PSI-BLAST 4.045757 Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
    3 View Details [330..461] deduced N/A Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle