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Protein Overview: SPCC1235.03

General Information:
Name(s) found: SPCC1235.03 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • SMR and CUE domain protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 399 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: ubiquitin binding [NASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSDLSAARV QLVQAKCQND LVRSSDELLN HRAIQESEQI ETAADALITS NIGHRSRQRK  60
   61 KKTKKATNSR KPLSKFQSNT EEVNEDPILK PSLSVWENNR LLIEKLTSIL NIPSSQINHE 120
  121 FYKNSSAWPI TIRNLIHRHQ PLSNITNNEL MKYQEEATQL AKDTGLSLKI CTDVLICSND 180
  181 YKNALWILCL IKETQHNEMG NIKLSSQTAK SNSSTQTKTC LNDQSSKLVE DDEALSAEDC 240
  241 NRLAEEYLEL RNMQYSNSAK EYRRSKSNHL FGGSAMYHAQ LGREYHEKAL KYRSLAMRSL 300
  301 AHSGTSHSLD LHGATVREAK TIVRERVAAW WAKEADTSPN SIRPFVIVTG RGNHSIGLEA 360
  361 RLLPAIVRLL QQDHWRFDAE HGQITVYGIN RHSKLNSNA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..305] deduced N/A No confident structure predictions are available.
    2 View Details [306..399] PSI-BLAST 22.0 No description for 2d9iA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
    		•  1.739613580002 bayes_pls_golite062009
  • polynucleotide kinase activity
    		•  1.739613580002 bayes_pls_golite062009
  • polydeoxyribonucleotide kinase activity
    		•  1.739613580002 bayes_pls_golite062009
  • ATP-dependent polynucleotide kinase activity
    		•  1.739613580002 bayes_pls_golite062009
  • binding
    		•  1.46180911639784 bayes_pls_golite062009
  • catalytic activity
    		•  0.368034275052766 bayes_pls_golite062009
  • nuclease activity
    		•  0.36330480698384 bayes_pls_golite062009
  • protein binding
    		•  0.224535421875415 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle