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Protein Overview: SPAC19D5.05c

General Information:
Name(s) found: SPAC19D5.05c [Sanger Pombe]
Description(s) found:
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  • pir||T37965 probable 40s ribosomal protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|52783031|sp|O13835.1|IMP3_SCHPO RecName: Full=U3 small nucleolar ribonucleoprotein protein imp3; Short=U3 snoRNP protein imp3 [NCBI NR]
  • gi|2440181|emb|CAB16715.1| U3 snoRNP-associated protein Imp3 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115815|ref|NP_594903.1| U3 snoRNP-associated protein Imp3 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • U3 snoRNP-associated protein Imp3 [Sanger Pombe]
  • U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE U3 SNORNP COMPONENT; REQUIRED FOR PRE- 18S RRNA PROCESSING; SIMILAR TO S. CEREVISIAE IMP3: O13835; [pompepVF.fasta]
  • PUTATIVE U3 SNORNP COMPONENT; REQUIRED FOR PRE-18S RRNA PROCESSING; SIMILAR TO S. CEREVISIAE IMP3: O13835; [pompepV13]
  • Putative component of U3 snoRNP, required for pre-18S rRNA processing [pompep4896]
  • |||putative ribonucleoprotein (RNP) complex (PMID 12068309) [pompepnew.fasta]
  • U3 small nucleolar ribonucleoprotein protein IMP3 homolog [4896.FASTAC]
  • |||ribonucleoprotein (RNP) complex (PMID 12068309) (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative component of U3 snoRNP, required for pre-18S rRNA processing [Schizosaccharomyces pombe]gi|2440181|emb|CAB16715.1| ribonucleoprotein (RNP) complex (PMID 12068309) (predicted); processome component (predicted) (PMID 12068309); involved in rRNA pr [nrdb_11152004_Chlamydomonas]
  • |||ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O13835) Putative component of U3 snoRNP, required for pre-18S rRNA processing [pompep4896_normal_reversed]
  • |||U3 snoRNP-associated protein Imp3 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • U3 small nucleolar ribonucleoprotein protein imp3 (U3 snoRNP protein imp3) [nr-271106-contam.fasta]
  • SPAC19D5.05c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC19D5.05c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |imp3||U3 snoRNP-associated protein Imp3 |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp3 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 183 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    small nuclear ribonucleoprotein complex [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]
    rRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILKHHEQK LLRKVDFLNY KNDDNNHRDV MVMRRYHISK REEYQKYNII CGKFRQLAHR  60
   61 LSLLDPTDPF RLQYENLLLE KLFDMGILPS KSKMSDIENK ANVSAICRRR LPVIMCKLRM 120
  121 SQVVSEATRL IEQGHVRVGP HVITDPAYLV TRSLEDFVTW TDTSKIKRTI AKYNDKLDDY 180
  181 DLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 40.69897 No description for 1vs5D was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  8.55021676512691 bayes_pls_golite062009
  • structural molecule activity
    		•  7.96033008326331 bayes_pls_golite062009
  • RNA binding
    		•  3.32539644009264 bayes_pls_golite062009
  • binding
    		•  1.62697242685211 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.5099313198888 bayes_pls_golite062009
  • protein binding
    		•  0.255198885489521 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle