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View Structure Prediction Details

Protein: SPAC19D5.05c
Organism: Schizosaccharomyces pombe
Length: 183 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC19D5.05c.

Description E-value Query
Range
Subject
Range
RR4_HYLSP - 30S ribosomal protein S4, chloroplastic OS=Hylocomium splendens GN=rps4 PE=3 SV=1
192.0 [0..12] [181..1]
gi|46486574 - gi|46486574|gb|AAS98723.1| ribosomal protein subunit 4 [Hypnodendron diversifolium]
191.0 [0..15] [181..1]
RR4_FUNHY - 30S ribosomal protein S4, chloroplastic OS=Funaria hygrometrica GN=rps4 PE=3 SV=1
191.0 [0..12] [179..1]
gi|63101091 - gi|63101091|gb|AAY33170.1| small ribosomal protein 4 [Platyneuron laticostatum]
191.0 [0..12] [179..1]
gi|29422405 - gi|29422405|gb|AAO84598.1| small ribosomal protein 4 [Breutelia chrysocoma]
191.0 [0..15] [181..2]
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
191.0 [0..12] [179..1]
RR4_CYABU - 30S ribosomal protein S4, chloroplastic OS=Cyathophorum bulbosum GN=rps4 PE=3 SV=1
191.0 [0..12] [181..1]
gi|67035630 - gi|67035630|gb|AAY62746.1| small ribosomal protein subunit 4 [Orthodicranum flagellare]
191.0 [0..14] [181..1]
RR4_ARBAR - 30S ribosomal protein S4, chloroplastic OS=Arbusculohypopterygium arbuscula GN=rps4 PE=3 SV=1
190.0 [0..12] [181..1]
RR4_SPLSP - 30S ribosomal protein S4, chloroplastic OS=Splachnum sphaericum GN=rps4 PE=3 SV=1
189.0 [0..12] [181..1]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILKHHEQK LLRKVDFLNY KNDDNNHRDV MVMRRYHISK REEYQKYNII CGKFRQLAHR  60
   61 LSLLDPTDPF RLQYENLLLE KLFDMGILPS KSKMSDIENK ANVSAICRRR LPVIMCKLRM 120
  121 SQVVSEATRL IEQGHVRVGP HVITDPAYLV TRSLEDFVTW TDTSKIKRTI AKYNDKLDDY 180
  181 DLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.69897
Match: 1vs5D
Description: No description for 1vs5D was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 8.55021676512691 bayes_pls_golite062009
structural molecule activity 7.96033008326331 bayes_pls_golite062009
RNA binding 3.32539644009264 bayes_pls_golite062009
binding 1.62697242685211 bayes_pls_golite062009
nucleic acid binding 1.5099313198888 bayes_pls_golite062009
protein binding 0.255198885489521 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle