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Protein Overview: SPBC31F10.07

General Information:
Name(s) found: SPBC31F10.07 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • cortical component Lsb5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 304 amino acids

    Gene Ontology:
    Cellular Component: cell cortex [IDALink to PubMed article][ISSLink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    actin cortical patch [ISS]
    Biological Process: actin filament organization [ISSLink to PubMed article]
    endocytosis [ISSLink to PubMed article]
    intracellular protein transport [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSETVPI TAVTTYIDRL TSRDTDDEDL SGIVQLSEAV NLTVTGPREA SRTLRKKLKY  60
   61 STPHEQVRAL VILQALIENA GSHFLQNFSD EKLEDRMLQC ATNSEYSKPV RKRAIHMIKL 120
  121 WHNDYSNVRG MESMSSLVSR LPQRQSSASH SEQPTINLKK VGPILERLIA SSSMAATNLS 180
  181 NSLVRINPNT ENPAKNKQIM VYYVDCKRAH RSLLRYIQAI QDEMWLANLL KANDEIVTAI 240
  241 DAFKEKCSEN SDYSSDSGSY SSSYSRHLDD RASYISRSSS GGSNAQRSED LDVNNPFGDH 300
  301 NRLE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] PSI-BLAST 50.39794 The solution structure of the VHS domain of human Signal transducing adaptor molecule 2
    2 View Details [163..304] PSI-BLAST 16.522879 ADP-ribosylation factor binding protein Gga1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • clathrin binding
    		•  4.2165986983076 bayes_pls_golite062009
  • phosphatidylinositol-4,5-bisphosphate binding
    		•  2.2854866638753 bayes_pls_golite062009
  • binding
    		•  2.00372346360794 bayes_pls_golite062009
  • protein binding
    		•  1.76598379050768 bayes_pls_golite062009
  • phosphoinositide binding
    		•  1.69886980741044 bayes_pls_golite062009
  • phospholipid binding
    		•  1.35873451348399 bayes_pls_golite062009
  • lipid binding
    		•  0.681936854618139 bayes_pls_golite062009
  • phosphatidylinositol binding
    		•  0.10007172207713 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle