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Protein Overview: ypt4

General Information:
Name(s) found: ypt4 / SPAC1B3.11c [Sanger Pombe]
Description(s) found:
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  • pir||T38030 ras-related protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3219964|sp|O13876.1|YPT4_SCHPO RecName: Full=GTP-binding protein ypt4 [NCBI NR]
  • gi|2330745|emb|CAB11239.1| GTPase Ypt4 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115708|ref|NP_594796.1| GTPase Ypt4 [Schizosaccharomyces pombe] [NCBI NR]
  • GTPase Ypt4 [Sanger Pombe]
  • GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1 [Swiss-Prot]
  • VACUOLAR RAB PROTEIN: O13876; [pompepVF.fasta]
  • Ras-related protein ypt4 [pompep4896]
  • |ypt4||vacuolar rab protein [pompepnew.fasta]
  • |ypt4||small GTPase|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • rab protein; involved in endocytosis [Schizosaccharomyces pombe]gi|2330745|emb|CAB11239.1| SPAC1B3.11c [Schizosaccharomyces pombe]gi|3219964|sp|O13876|YPT4_SCHPO Ras-related protein ypt4gi|7493265|pir||T38030 ras-related protein - fission yeast (Schizo [nrdb_11152004_Chlamydomonas]
  • |ypt4||GTPase|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O13876) Ras-related protein ypt4 [pompep4896_normal_reversed]
  • |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC1B3.11c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • GTP-binding protein ypt4 [nr-271106-contam.fasta]
  • SPAC1B3.11c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • GTP-binding protein ypt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt4 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 234 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: small GTPase mediated signal transduction [IEA]
    cellular response to stress [IEPLink to PubMed article]
    regulation of vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [IC]
    Molecular Function: GTP binding [ISSLink to PubMed article]
    GTPase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKESYDYLV KIVLAGPSGT GKSCLLQRFV KNQWDDQVSH TVGIDFASRI ISVGMGNQQK  60
   61 RIKLQIWDTA GQEKFRSVAR NYYRGAAGAV LVYDVTNKDS FEELSSWLSD IRAMAPSTIC 120
  121 VVLAGSKSDL QNQRQVSTEE AAEFCSEKHI SSAHETSSYT GSNVEECFLS VVSTIITRIE 180
  181 LGEIDPQDQS LGIQYGDLSF RRPVHPSSTS NWWTSITNWD DLVRLERQTR SYCC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] PSI-BLAST 47.69897 high resolution structure of GDP-bound human Rab4a


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle