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Protein Overview: SPAC4F10.09c

General Information:
Name(s) found: SPAC4F10.09c [Sanger Pombe]
Description(s) found:
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  • gi|7491137|pir||T38813 hypothetical protein SPAC4F10.09c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|6226443|sp|O36021.1|YEK9_SCHPO RecName: Full=Uncharacterized protein C4F10.09c [NCBI NR]
  • gi|2388980|emb|CAB11712.1| ribosome biogenesis protein Noc1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115664|ref|NP_594752.1| ribosome biogenesis protein Noc1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • ribosome biogenesis protein Noc1 [Sanger Pombe]
  • Uncharacterized protein C4F10.09c OS=Schizosaccharomyces pombe GN=SPAC4F10.09c PE=1 SV=1 [Swiss-Prot]
  • POSSBLY REQUIRED FOR 60S RIBOSOMAL SUBUNIT BIOGENESIS; SIMILAR TO S. CEREVISIAE MAK21: O36021; [pompepVF.fasta]
  • PUTATIVE PROTEIN REQUIRED FOR 60S RIBOSOMAL SUBUNIT BIOGENESIS; BY SIMILARITY TO YEAST MAK21: O36021; [pompepV13]
  • Hypothetical protein C4F10.09c in chromosome I [pompep4896]
  • |||possibly involved in 60S ribosomal subunit biogenesis [pompepnew.fasta]
  • |||involved in ribosome biogenesis and assembly (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2388980|emb|CAB11712.1| SPAC4F10.09c [Schizosaccharomyces pombe]gi|6226443|sp|O36021|YEK9_SCHPO Hypothetical protein C4F10.09c in chromosome Igi|7491137|pir||T38813 hypothetical protein SPAC4F10.09c - [nrdb_11152004_Chlamydomonas]
  • |||involved in ribosome biogenesis and assembly |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O36021) Hypothetical protein C4F10.09c in chromosome I [pompep4896_normal_reversed]
  • |||ribosome biogenesis protein Noc1 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC4F10.09c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC4F10.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Uncharacterized protein C4F10.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F10.09c PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 860 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Noc1p-Noc2p complex [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLYPKPKR GQKIIFNEEG EGTIDTKPQG VMFDPGVPWY NIPLPELHED KKFVNVDHVS  60
   61 ELETRGLLLL KEDSERFSET LGHGTADKRM LQTLISSGTT SDRISALTLL VQESPIHAVK 120
  121 ALETLLSICS KKSRNEATQA ITTLKDLFIG GLLPDRKLKY MKQQSCLGSK NVTDKHLMVW 180
  181 AFESFLKSFY FKYIQIIEAL SFDALLFVKS QMVSTIYDLL KAKPEQEQNL LKLLINKLGD 240
  241 KENKIASKAS YSILQLEASH PAMKLVITKE IERFIFAPST SRTSCYYTLI TLNQTVLTHK 300
  301 QVDVANLLIE IYFVFFTKLL FALEKEEVAD APTLEKKSLQ SDSKNKKSQK RKKDEDLRKE 360
  361 AEENVNSRVI SAVLTGVNRA YPFAEVNSEK FDKHMNTLFA ITHTASFNTS VQVLMLIFQA 420
  421 SASRDFISDR YYKSLYESLL DPRLTTSSKQ SLYLNLLYKS LIIDNNIPRV RAFIKRMVQV 480
  481 SAWQQPPLVT GLFHVMHQLV IATTALRSMF TNAEIHDFDG DEEEVFKDVE EDDVSEDQKV 540
  541 DSDKDGKLSD KQSHSAYVVG NVSVSTKKEH LSYDGRKRDP QYSNADGSCL WEIHPFLNHF 600
  601 HPTVSLLAKS LVYGEKILGK PNLSLHTLNH FLDKFAYRNP KKSAAARGHS IMQPLAGGLS 660
  661 KGYVPGSTYS GVPMNSEQFT SKKQEEIPVD ELFFYRFFND KYIKGKQARK TKVDRDEEGE 720
  721 IDEDEVWKAL VDSKPQLEMD EEESDFDSEE MDKAMTDMGS DSEQSADEND NESMASEEKP 780
  781 MFSDEENLSE IAHSEDEFDD TVDFFEDEND LLPFNETDDE EEIQTVDHSE THSHKKKKRK 840
  841 AIKDLPVFAD AESYAHLLEN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..638] FFAS03 1.57 Adaptin beta subunit N-terminal fragment
    2 View Details [639..860] MSA 10.060996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  2.62914297393378 bayes_pls_golite062009
  • structural molecule activity
    		•  2.41912877876968 bayes_pls_golite062009
  • binding
    		•  2.32703786067369 bayes_pls_golite062009
  • protein binding
    		•  1.3800948965226 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.118461769548431 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle