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Protein Overview: SPAC14C4.12c

General Information:
Name(s) found: SPAC14C4.12c [Sanger Pombe]
Description(s) found:
Found 15 descriptions.
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  • SWIRM domain protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: Rpd3L-Expanded complex [IDALink to PubMed article]
    Rpd3S complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    regulation of transcription, DNA-dependent [NASLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSQTLVYS IPRNVEKDTC AAAIKAYQYL ISPPPSPIPN DKVASTVDVP KCSTIPESPK  60
   61 DSIVEPKPTA TPVAQLHSKV YDLYRDSPKI WLRRERQWLQ RHSPAYRFST PAAKRPRRQP 120
  121 SSFLDVHASN TRKRGSPDTP DSGHSTPHSK GDVHPGMPQH NTRFKQSSRE FSSNTQAIDV 180
  181 ANTPYELLPD YSPDMSVLDK RSHPRPLRSE WKGPPLDLSN DENRHLLHPA ELQLAATLRL 240
  241 PCLVYLDNKR RIFAEWHNRR TQGLSFRKTD AQRASRVDVN KASRLWKAFH DEGFFDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] MSA 10.130996 View MSA. No confident structure predictions are available.
    2 View Details [204..297] PSI-BLAST 25.69897 No description for 2eljA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle