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Protein Overview: mtr4

General Information:
Name(s) found: mtr4 / SPAC6F12.16c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • ATP-dependent RNA helicase, TRAMP complex subunit Mtr4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1117 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    TRAMP complex [IDALink to PubMed article]
    Biological Process: mRNA export from nucleus [ISSLink to PubMed article]
    tRNA catabolic process [ISSLink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process [ISSLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    ATP-dependent RNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGGELDDAF GVFEGKVPKS LKEESKNSQN SQNSQKIKRT LTDKNASNQE QGTKKLESSV  60
   61 GEQESATKRA KIENLKDNQD LIPNNDVNGI HINNSAVADT KHKPKIGDIA ADDISNEVSI 120
  121 KNEGDTIPEA TVADSFEQEA SLQVAGKVGM TEAKSSTEEV VELRHQVRHQ VSIPPNYDYV 180
  181 PISKHKSPIP PARTYPFTLD PFQAVSIACI ERQESVLVSA HTSAGKTVVA EYAVAQSLRD 240
  241 KQRVIYTSPI KALSNQKYRE LLAEFGDVGL MTGDVTINPD ATCLVMTTEI LRSMLYRGSE 300
  301 VMREVAWVIF DEIHYMRDKE RGVVWEETII LLPDKSHFVF LSATIPNAMQ FAEWITKIHR 360
  361 QPCHVVYTDF RPTPLQHYLF PSGSDGIHLV VDEKSNFREE NFQRAMSALM EKQGDDPAAM 420
  421 ATKGNAKKGK TGKGGVKGPS DIYKIVKMIM VKNYNPVIVF SFSKRECEAL ALQMSKLDMN 480
  481 DQTERDLVTT IFNNAVNQLS EKDRELPQIE HILPLLRRGI GIHHSGLLPI LKEVIEILFQ 540
  541 EGLLKVLFAT ETFSIGLNMP AKTVVFTNVR KFDGKTFRWI SGGEYIQMSG RAGRRGLDDR 600
  601 GIVILMIDEK MDPPVAKSML KGEADRLDSA FHLSYNMILN LLRVEGISPE FMLERCFFQF 660
  661 QNSLEVPKLE AKLEESQQHY DSFTILDERP LEEYHTLKTQ LERYRTDVRT VVNHPNFCLS 720
  721 FLQGGRLVRV KVGNEDFDWG VVVNVSKRPL PKGQSNEYLP QESYIVHTLV MVASDTGPLR 780
  781 IRSGHLPEVH PPAAEDKGKF EVVPFLLSSL DGIAHIRVFL PNDLKSQGQK LTVGKALSEV 840
  841 KRRFPEGITL LDPVENMNIK EPTFIKLMKK VNILESRLLS NPLHNFSELE EKYAEYLRKL 900
  901 ALLEEVKDLK KKLSKARSIM QLDELNSRKR VLRRLGFTTS DDVIEVKGRV ACEISSGDGL 960
  961 LLTELIFNGM FNDLTPEQCA ALLSCLVFQE KSEVENQRMK EELAGPLKIL QEMARRIAKV1020
 1021 SKESKQELNE EEYVNSFKPS LMEVVYAWAH GASFAQICKM TDVYEGSLIR MFRRLEELIR1080
 1081 QMVDAAKVIG NTSLQQKMED TIACIHRDIV FSASLYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] deduced N/A No confident structure predictions are available.
    2 View Details [98..179] PSI-BLAST 20.69897 RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
    3 View Details [180..722] PSI-BLAST 45.30103 Structure of the RecQ Catalytic Core
    4 View Details [723..795] deduced N/A No confident structure predictions are available.
    5 View Details [796..941] deduced N/A No confident structure predictions are available.
    6 View Details [942..1117] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle