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Protein Overview: SPCC320.14

General Information:
Name(s) found: SPCC320.14 [Sanger Pombe]
Description(s) found:
Found 25 descriptions.
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  • threo-3-hydroxyaspartate ammonia-lyase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 323 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: threonine catabolic process [ISSLink to PubMed article]
    Molecular Function: magnesium ion binding [IEA]
    pyridoxal phosphate binding [IEA]
    threo-3-hydroxyaspartate ammonia-lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNLVLPTY DDVASASERI KKFANKTPVL TSSTVNKEFV AEVFFKCENF QKMGAFKFRG  60
   61 ALNALSQLNE AQRKAGVLTF SSGNHAQAIA LSAKILGIPA KIIMPLDAPE AKVAATKGYG 120
  121 GQVIMYDRYK DDREKMAKEI SEREGLTIIP PYDHPHVLAG QGTAAKELFE EVGPLDALFV 180
  181 CLGGGGLLSG SALAARHFAP NCEVYGVEPE AGNDGQQSFR KGSIVHIDTP KTIADGAQTQ 240
  241 HLGNYTFSII KEKVDDILTV SDEELIDCLK FYAARMKIVV EPTGCLSFAA ARAMKEKLKN 300
  301 KRIGIIISGG NVDIERYAHF LSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..323] PSI-BLAST 70.30103 Crystal Structure of S.pombe Serine Racemase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • threonine racemase activity
    		•  4.44340924206787 bayes_pls_golite062009
  • threonine synthase activity
    		•  3.59927532963055 bayes_pls_golite062009
  • cysteine synthase activity
    		•  3.57860549303214 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  3.33109959091277 bayes_pls_golite062009
  • catalytic activity
    		•  2.38994231321972 bayes_pls_golite062009
  • tryptophan synthase activity
    		•  1.99526226543975 bayes_pls_golite062009
  • lyase activity
    		•  1.87743897464083 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.923824749425553 bayes_pls_golite062009
  • binding
    		•  0.557628798477604 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.476674617721478 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.249761226675912 bayes_pls_golite062009
  • protein binding
    		•  0.066947056585999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle