YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC320.14
Organism:	Schizosaccharomyces pombe
Length:	323 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC320.14.

Description	E-value	Query Range	Subject Range
gi\|87281645, gi\|... - gi\|87303848\|ref\|ZP_01086553.1\| threonine dehydratase [Synechococcus sp. WH 5701], gi\|87281645\|gb\|EAQ...	306.0	[0..16]	[323..10]
gi\|86604872 - gi\|86604872\|ref\|YP_473635.1\| threonine dehydratase [Cyanobacteria bacterium Yellowstone A-Prime] gi\|86553414, gi\|... - gi\|86604872\|ref\|YP_473635.1\| threonine dehydratase [Synechococcus sp. JA-3-3Ab], gi\|86553414\|gb\|ABC9...	306.0	[0..13]	[323..7]
gi\|77868036, gi\|... - gi\|77953083\|ref\|ZP_00817494.1\| Threonine dehydratase I [Marinobacter aquaeolei VT8], gi\|77868036\|gb\|...	304.0	[0..16]	[323..10]
gi\|90415223\|ref\|... - threonine dehydratase [marine gamma proteobacterium HTCC2207] gi\|90415223, gi\|... - gi\|90415223\|ref\|ZP_01223157.1\| threonine dehydratase [marine gamma proteobacterium HTCC2207], gi\|903...	304.0	[0..16]	[323..10]
gi\|60502212, gi\|... - gi\|60502212\|gb\|AAX22214.1\| threonine deaminase [Nicotiana attenuata], gi\|12539611\|gb\|AAG59585.1\|AF22...	303.0	[0..13]	[322..106]
gi\|90413761, gi\|... - gi\|90413761\|ref\|ZP_01221749.1\| threonine dehydratase [Photobacterium profundum 3TCK], gi\|90325230\|gb...	300.0	[0..16]	[323..23]
gi\|78184641, gi\|... - gi\|78184641\|ref\|YP_377076.1\| threonine dehydratase [Synechococcus sp. CC9902], gi\|78168935\|gb\|ABB260...	300.0	[0..16]	[323..9]
gi\|54310634, gi\|... - gi\|54310634\|ref\|YP_131654.1\| threonine dehydratase [Photobacterium profundum SS9], gi\|46915077\|emb\|C...	300.0	[0..16]	[323..23]
gi\|116065912, gi... - gi\|116070507\|ref\|ZP_01467776.1\| threonine dehydratase [Synechococcus sp. BL107], gi\|116065912\|gb\|EAU...	299.0	[0..16]	[323..9]
gi\|220931774, gi... - gi\|89211514\|ref\|ZP_01189876.1\| Threonine dehydratase II [Halothermothrix orenii H 168], gi\|89158891\|...	299.0	[0..9]	[323..4]

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Predicted Domain #1

Region A:
Residues: [1-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNLVLPTY DDVASASERI KKFANKTPVL TSSTVNKEFV AEVFFKCENF QKMGAFKFRG  60
   61 ALNALSQLNE AQRKAGVLTF SSGNHAQAIA LSAKILGIPA KIIMPLDAPE AKVAATKGYG 120
  121 GQVIMYDRYK DDREKMAKEI SEREGLTIIP PYDHPHVLAG QGTAAKELFE EVGPLDALFV 180
  181 CLGGGGLLSG SALAARHFAP NCEVYGVEPE AGNDGQQSFR KGSIVHIDTP KTIADGAQTQ 240
  241 HLGNYTFSII KEKVDDILTV SDEELIDCLK FYAARMKIVV EPTGCLSFAA ARAMKEKLKN 300
  301 KRIGIIISGG NVDIERYAHF LSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.30103
Match:	1v71A
Description:	Crystal Structure of S.pombe Serine Racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
threonine racemase activity	4.44340924206787	bayes_pls_golite062009
threonine synthase activity	3.59927532963055	bayes_pls_golite062009
cysteine synthase activity	3.57860549303214	bayes_pls_golite062009
L-threonine ammonia-lyase activity	3.33109959091277	bayes_pls_golite062009
catalytic activity	2.38994231321972	bayes_pls_golite062009
tryptophan synthase activity	1.99526226543975	bayes_pls_golite062009
lyase activity	1.87743897464083	bayes_pls_golite062009
carbon-oxygen lyase activity	0.923824749425553	bayes_pls_golite062009
binding	0.557628798477604	bayes_pls_golite062009
ammonia-lyase activity	0.476674617721478	bayes_pls_golite062009
carbon-nitrogen lyase activity	0.249761226675912	bayes_pls_golite062009
protein binding	0.066947056585999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: