Protein Overview: SPAC1D4.10

General Information:
Name(s) found:	SPAC1D4.10 [Sanger Pombe]
Description(s) found: Found 21 descriptions. SHOW ALL	tRNA endonuclease [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	809 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytosol [IDA]
Biological Process:	tRNA 3'-trailer cleavage [ISS]
Molecular Function:	zinc ion binding [IEA] 3'-tRNA processing endoribonuclease activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTVNFRAT KNFYLQFVSV SSRDTSCIPC IHLFFDSKRY VFGSVGEGCQ RAILSQQLRL  60
   61 SKIKDVFLMQ GSSISSPDTY DSSSSSSTTS VSDMLQLDDR DKVIVSERNS MCSTVNYPTW 120
  121 WDSCGGFPGF LLSLNDISEP GETGEASPFV LHGPSEVHQF LSSMRHFTYH TNVNLTVQGY 180
  181 TSAEAPVFVD ENICVTPVVV SLVKNSFKKR KHENINRGTN ARPLKEDRAN TSPHWYSHVS 240
  241 NDTSFVVENA MYNTPAPLEP DKPELFISYI VQSHPTPGKF DAAKAKSLGI TKGLDCGRLA 300
  301 RGEPVTLENG KTVYPKEVIG PSIPGSSFFI IHCPNELVID LVIENHKWTN APKPVCVIHS 360
  361 VTPEVYKNPR YQSWISSFPS EVSHLIASTE VNEVINYPRS AVAIATLNLL DSKVFPLGFN 420
  421 CYEVKNVQKN NRIAFAKPKL RFAFGKKTGI DDSEVGVSIE ELKDKILKEK PDYKSFVEEA 480
  481 QKYVSDKPKA PSFAGSDIQI CTLGTGSAMP SLYRNVSSTY VRIPVDKKCM EDSAISMKNI 540
  541 LLDCGEGTLG RLSRQYGDNL KYEIASLRWI YISHMHADHH AGVIGVLKAW TKYSDGRSKL 600
  601 FITAPPQFEF WLLEYSRIDY LPLSNIVFIS NSALRTDRKP SALESSRLSS LFKEFDLVSF 660
  661 RTVPAIHCPY SYCMEITNSS GWKIAYSGDT RPSEDFANIA KDSTLLIHEA TLEDSMHEIA 720
  721 IKKQHSTYSE ALEVAKKAGT KNVILTHFSQ RYPKLPDIDI STEDLHIALA FDGMTLKISD 780
  781 ISLFRYFGKP LAYLFNEENL KEESDPLKF

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
3'-tRNA processing endoribonuclease activity	0.998280249151351	bayes_pls_golite062009
nucleic acid binding	0.980281910076056	bayes_pls_golite062009
catalytic activity	0.941400907161877	bayes_pls_golite062009
binding	0.862029507899862	bayes_pls_golite062009
RNA binding	0.794779546418275	bayes_pls_golite062009

Term	Confidence	Notes
3'-tRNA processing endoribonuclease activity	0.998280249151351	bayes_pls_golite062009
nucleic acid binding	0.980281910076056	bayes_pls_golite062009
catalytic activity	0.941400907161877	bayes_pls_golite062009
binding	0.862029507899862	bayes_pls_golite062009
RNA binding	0.794779546418275	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.94

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..451]	PSI-BLAST	47.69897	Crystal structure of RNase Z
2	View Details	[452..809]	PSI-BLAST	34.045757	Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida, Northeast Structural Genomics Target PpR6

Protein Overview: SPAC1D4.10

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: