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View Structure Prediction Details

Protein: SPAC1D4.10
Organism: Schizosaccharomyces pombe
Length: 809 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1D4.10.

Description E-value Query
Range		 Subject
Range
gi|56206558 - gi|56206558|emb|CAI24608.1| elaC homolog 2 (E. coli) [Mus musculus]
 457.0 [0..79] [808..66]
RNZ2_RAT - Zinc phosphodiesterase ELAC protein 2 OS=Rattus norvegicus GN=Elac2 PE=1 SV=1
 453.0 [0..79] [808..68]
RNZ2_GORGO - Zinc phosphodiesterase ELAC protein 2 OS=Gorilla gorilla gorilla GN=ELAC2 PE=2 SV=1
gi|10946489 - gi|10946489|gb|AAG24916.1|AF308694_1 ELAC2 [Gorilla gorilla]
 446.0 [0..71] [799..66]
ELAC2 - elaC homolog 2 (E. coli)
 444.0 [0..71] [799..66]
RNZ2_PANTR - Zinc phosphodiesterase ELAC protein 2 OS=Pan troglodytes GN=ELAC2 PE=2 SV=1
 443.0 [0..71] [799..66]

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Predicted Domain #1
Region A:
Residues: [1-451] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTVNFRAT KNFYLQFVSV SSRDTSCIPC IHLFFDSKRY VFGSVGEGCQ RAILSQQLRL  60
   61 SKIKDVFLMQ GSSISSPDTY DSSSSSSTTS VSDMLQLDDR DKVIVSERNS MCSTVNYPTW 120
  121 WDSCGGFPGF LLSLNDISEP GETGEASPFV LHGPSEVHQF LSSMRHFTYH TNVNLTVQGY 180
  181 TSAEAPVFVD ENICVTPVVV SLVKNSFKKR KHENINRGTN ARPLKEDRAN TSPHWYSHVS 240
  241 NDTSFVVENA MYNTPAPLEP DKPELFISYI VQSHPTPGKF DAAKAKSLGI TKGLDCGRLA 300
  301 RGEPVTLENG KTVYPKEVIG PSIPGSSFFI IHCPNELVID LVIENHKWTN APKPVCVIHS 360
  361 VTPEVYKNPR YQSWISSFPS EVSHLIASTE VNEVINYPRS AVAIATLNLL DSKVFPLGFN 420
  421 CYEVKNVQKN NRIAFAKPKL RFAFGKKTGI D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.69897
Match: 1y44A
Description: Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3'-tRNA processing endoribonuclease activity 0.998280249151351 bayes_pls_golite062009
nucleic acid binding 0.980281910076056 bayes_pls_golite062009
catalytic activity 0.941400907161877 bayes_pls_golite062009
binding 0.862029507899862 bayes_pls_golite062009
RNA binding 0.794779546418275 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [452-809] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSEVGVSIEE LKDKILKEKP DYKSFVEEAQ KYVSDKPKAP SFAGSDIQIC TLGTGSAMPS  60
   61 LYRNVSSTYV RIPVDKKCME DSAISMKNIL LDCGEGTLGR LSRQYGDNLK YEIASLRWIY 120
  121 ISHMHADHHA GVIGVLKAWT KYSDGRSKLF ITAPPQFEFW LLEYSRIDYL PLSNIVFISN 180
  181 SALRTDRKPS ALESSRLSSL FKEFDLVSFR TVPAIHCPYS YCMEITNSSG WKIAYSGDTR 240
  241 PSEDFANIAK DSTLLIHEAT LEDSMHEIAI KKQHSTYSEA LEVAKKAGTK NVILTHFSQR 300
  301 YPKLPDIDIS TEDLHIALAF DGMTLKISDI SLFRYFGKPL AYLFNEENLK EESDPLKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.045757
Match: 1xtoA
Description: Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida, Northeast Structural Genomics Target PpR6
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3'-tRNA processing endoribonuclease activity 0.998280249151351 bayes_pls_golite062009
nucleic acid binding 0.980281910076056 bayes_pls_golite062009
catalytic activity 0.941400907161877 bayes_pls_golite062009
binding 0.862029507899862 bayes_pls_golite062009
RNA binding 0.794779546418275 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle