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Protein Overview: nab3

General Information:
Name(s) found: nab3 / SPAC3H8.09c [Sanger Pombe]
Description(s) found:
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  • pir||T38767 probable RNA-binding protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|19113914|ref|NP_593002.1| poly(A) binding protein Nab3 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|1723220|sp|Q10145.1|YAS9_SCHPO RecName: Full=Uncharacterized RNA-binding protein C3H8.09c [NCBI NR]
  • gi|1177667|emb|CAA93166.1| poly(A) binding protein Nab3 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • poly(A) binding protein Nab3 [Sanger Pombe]
  • Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces pombe GN=SPAC3H8.09c PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE RNA-BINDING PROTEIN: Q10145; [pompepVF.fasta]
  • Hypothetical RNA-binding protein C3H8.09c in chromosome I [pompep4896]
  • |||RNA-binding protein [pompepnew.fasta]
  • |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative RNA-binding protein [Schizosaccharomyces pombe]gi|1177667|emb|CAA93166.1| SPAC3H8.09c [Schizosaccharomyces pombe]gi|1723220|sp|Q10145|YAS9_SCHPO Hypothetical RNA-binding protein C3H8.09c in chromosome Igi|7492929|pir||T38767 probable RNA-bindi [nrdb_11152004_Chlamydomonas]
  • (Q10145) Hypothetical RNA-binding protein C3H8.09c in chromosome I [pompep4896_normal_reversed]
  • |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC3H8.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC3H8.09c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.09c PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 738 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: termination of RNA polymerase II transcription, poly(A)-independent [ISSLink to PubMed article]
    RNA 3'-end processing [NASLink to PubMed article]
    cellular response to stress [IEPLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: poly(A) RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSKDSSF QVETPVQNIL ETSTNSELQD QVSSPYEPDY NSPVKQAAAS ISALQTQDDT  60
   61 LFNNVDERTL ENKDGNKSDD ANFDQVSGIP SGSLEIPILN SATSNIRLTP SDTYNNIPVS 120
  121 DTNNEEISKN IYGAPILEST SSDFQSKDSL STTQPSVSGG NGSTSQSPPS LDVEQNKPFS 180
  181 ISNEPVEQET ENSSTKDLQV YDFQTASEHL PEQSLQNTTY YDPSKTYSSV NFEEIEYGKS 240
  241 HEKLDLPYRT TDFIPYSKDL STSPEAHRTS IYSYSANLPN YYNEHNELHE HHNPQTPSSP 300
  301 ESAYSPENLQ LNHEAQNVEY LGNNAAEKSL QMNLEDEQRF QQFLKDEESI MSNWYPGQFP 360
  361 SASRLFLGHL NTKSLSKRNL WKVFKIYGPL AQIVLKANYG FVQFFTNEDC ARALNAEQGN 420
  421 FVRGQKLHLE ISKIQKKYQN QIENMKKGSH VTKSNQYSEM IGNLPYPTSS RKRTRSPLMS 480
  481 KGKSYDRKGS ISMSKNFSPD CEILVTEDCP KEFVWGVEKV FQERRLNIHT TCLYRDSNLQ 540
  541 VIIKSCIINS VKSIILINAG LAHLGKVSVQ VFKDGSSDSE VRCDEYAAVD VMVAASIVHH 600
  601 AKTSLMHSAA SSTPSYNGER IVPDVPSPCI STNPNLPALV GSLDSVNLHH LLGFIQNTYS 660
  661 TTSYIPTRVS FNPNDTGGSF GTITSQSQFV VNEMPKNYAR DNYEALHSQE SRQRSSVAGN 720
  721 KQLQKILEQL AELKQPDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] deduced N/A No confident structure predictions are available.
    2 View Details [115..237] MSA 1.117996 View MSA. No confident structure predictions are available.
    3 View Details [238..455] PSI-BLAST 22.045757 Poly(A)-binding protein
    4 View Details [456..574] PSI-BLAST 25.30103 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    5 View Details [575..738] PSI-BLAST 5.0 Sec24


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle