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Protein Overview: rrn3

General Information:
Name(s) found: rrn3 / SPAC18G6.11c [Sanger Pombe]
Description(s) found:
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  • pir||T37924 rna polymerase i specific transcription initiati on factor - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|19114586|ref|NP_593674.1| ribosomal DNA (rDNA) transcription factor Rrn3 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|1351726|sp|Q10110.1|RRN3_SCHPO RecName: Full=RNA polymerase I-specific transcription initiation factor rrn3 [NCBI NR]
  • gi|1122375|emb|CAA92389.1| ribosomal DNA (rDNA) transcription factor Rrn3 [Schizosaccharomyces pombe] [NCBI NR]
  • ribosomal DNA transcription factor Rrn3 [Sanger Pombe]
  • (Q10110) Hypothetical protein C18G6.11c in chromosome I [Swiss-Prot]
  • RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe GN=rrn3 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR; SIMILAR TO S. CEREVISIAE RRN3: Q10110; [pompepVF.fasta]
  • PUTATIVE RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR: Q10110; [pompepV13]
  • Hypothetical protein C18G6.11c in chromosome I [pompep4896]
  • |rrn3||putative RNA polymerase I specific transcription initiation factor [pompepnew.fasta]
  • |rrn3||RNA polymerase I specific transcription initiation factor (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • rna polymerase i specific transcription initiati on factor [Schizosaccharomyces pombe]gi|1122375|emb|CAA92389.1| SPAC18G6.11c [Schizosaccharomyces pombe]gi|1351726|sp|Q10110|YAQB_SCHPO Hypothetical protein C18G6.11c in chromosome Igi|7493341|pir||T3792 [nrdb_11152004_Chlamydomonas]
  • |rrn3||RNA polymerase I specific transcription initiation factor |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC18G6.11c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC18G6.11c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • RNA polymerase I-specific transcription initiation factor rrn3 [nr-271106-contam.fasta]
  • RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrn3 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 599 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    RNA polymerase I transcription factor complex [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: transcription from RNA polymerase I promoter [IMPLink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    Molecular Function: RNA polymerase I transcription factor activity [IMPLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIISSTNP QYINKCVNNG TMASSTNVPD RTVGSKSFAS SVSKNDGRLM QQMLRAFVNK  60
   61 ALDDKAEGNF AGYEDLRRQF AAKSDTKDAP SSLQLQNLLS ALTCNVSRLD SSNSSLVMSV 120
  121 LDSVWVSRDE SFVRCYTRFL GNLISAQSNY LPLVMTMLIQ HMLYRPDSLA IHYEHAHMAL 180
  181 KYVLELVPRA HSFLYSSILE EFPYKDESLL AQMTYISNVL SICEYVPSIK GPVLHAIIDK 240
  241 IIQIDVEIQV EVDDDDEEED EVVTDDDGTS NADSEVITAS TLYERHTAIS SEMTSSTILT 300
  301 PPSLTDTRQL MQQLDQLLYT LFSYLDSNLK STSRDRYLVY NSLIKSFVNT VLKTFRCRYT 360
  361 QFLIFWASQL DPEFTDIFLG VLTEVCLDPS QPYTLRLSGA MYIGSYVARA KALEKNTIQI 420
  421 IVNMMTRWVE AYLDQCENEL SDDLLSKHSV FYAINQSIFY IFCFRWRELC VSDESESMEP 480
  481 RPNEWIPGLE ILHRSVLSRL NPLRYCSPNI VLQFAKVANH LNFMYVYSII EQNRKGIFRE 540
  541 GFDTMDAYFP FDPYRLTKSS IIVQPFYNEW QQIPGLDDDE EEEDTDYESS TVMLGESPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] MSA 2.040989 View MSA. No confident structure predictions are available.
    2 View Details [148..357] deduced N/A No confident structure predictions are available.
    3 View Details [358..481] MSA 3.052996 View MSA. No confident structure predictions are available.
    4 View Details [482..599] MSA 1.050981 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle